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Lag0002350 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002350
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr4:41944642..41945241
RNA-Seq ExpressionLag0002350
SyntenyLag0002350
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY85402.1 hypothetical protein Acr_04g0001400 [Actinidia rufa]3.9e-1448.48Show/hide
Query:  PAQPPPFP----------PHPNFFTPNPYPTLP---QPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL
        PA PPP            P+P     +P P +P   QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   P +FLD  + Q NPE+  W+RYNRL
Subjt:  PAQPPPFP----------PHPNFFTPNPYPTLP---QPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]3.3e-1347.47Show/hide
Query:  PAQPPPF----------PPHPNFFTPNP---YPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL
        PA PPP            P+P     +P    P++ QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   P +FLD  + Q NPE+  W+RYNRL
Subjt:  PAQPPPF----------PPHPNFFTPNP---YPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL

RVW56403.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]5.7e-1341.82Show/hide
Query:  PQTSYPQPIFPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPE
        PQ   P PIF PN                         T   YP+L QPL++KL++TN  LWKNQLLN ++ANGL  F++G  P P++FLD  + Q NP 
Subjt:  PQTSYPQPIFPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPE

Query:  YLGWERYNRL
        ++ WER N L
Subjt:  YLGWERYNRL

RVX04814.1 hypothetical protein CK203_024917 [Vitis vinifera]1.8e-1151.47Show/hide
Query:  PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNR
        P P+L QPLS+KL++TN LLW NQL+N ++ANGL  F++     P ++LD  R Q NP+++ WER NR
Subjt:  PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNR

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]1.9e-2464.36Show/hide
Query:  FPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNR
        FPP       P P F AQP      PN F+ NP+PTLPQPL+VKLND NFLLWKNQLLNAV+ANGL G+LDG+I  P QFLD ++ QPNP Y  WERYNR
Subjt:  FPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNR

Query:  L
        L
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A438F8X3 Retrovirus-related Pol polyprotein from transposon RE12.7e-1341.82Show/hide
Query:  PQTSYPQPIFPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPE
        PQ   P PIF PN                         T   YP+L QPL++KL++TN  LWKNQLLN ++ANGL  F++G  P P++FLD  + Q NP 
Subjt:  PQTSYPQPIFPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPE

Query:  YLGWERYNRL
        ++ WER N L
Subjt:  YLGWERYNRL

A0A438J785 Uncharacterized protein8.8e-1251.47Show/hide
Query:  PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNR
        P P+L QPLS+KL++TN LLW NQL+N ++ANGL  F++     P ++LD  R Q NP+++ WER NR
Subjt:  PYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNR

A0A6J1DQX7 uncharacterized protein LOC1110223159.1e-2564.36Show/hide
Query:  FPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNR
        FPP       P P F AQP      PN F+ NP+PTLPQPL+VKLND NFLLWKNQLLNAV+ANGL G+LDG+I  P QFLD ++ QPNP Y  WERYNR
Subjt:  FPPNQPQQQFPRPMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNR

Query:  L
        L
Subjt:  L

A0A7J0EGI5 Uncharacterized protein1.9e-1448.48Show/hide
Query:  PAQPPPFP----------PHPNFFTPNPYPTLP---QPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL
        PA PPP            P+P     +P P +P   QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   P +FLD  + Q NPE+  W+RYNRL
Subjt:  PAQPPPFP----------PHPNFFTPNPYPTLP---QPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL

A0A7J0GPN0 UBX domain-containing protein1.6e-1347.47Show/hide
Query:  PAQPPPF----------PPHPNFFTPNP---YPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL
        PA PPP            P+P     +P    P++ QPL+VKL+D N+++WK QLLN V+ANGL  FLDGS   P +FLD  + Q NPE+  W+RYNRL
Subjt:  PAQPPPF----------PPHPNFFTPNP---YPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAATGATGAAGGTTCTTCTTCAAAATCCATCTCCAACCAGCAAGATACTCCCATTCATCCCACCACCCCAATAGCAACTCCGACTGGAACCCCCATCCATAACCC
ACCTCAAAATCCCACCTCTGCTGTTCAACCCAACTTTTGCCCTCCTCAAAACCTAAATCGAAGTTTCCAGCCTCAAAATCCTAATCCTAATCCTCCCCTGTATGCTCCCT
TCAATCCAAACACGCCTCCCCCTGGCTTTTATCCTTATCATTATCCACCCCAAACCTCTTATCCCCAGCCCATTTTTCCTCCGAATCAGCCGCAACAGCAGTTTCCTCGC
CCAATGTTTCCTGCTCAACCTCCGCCTTTCCCACCACATCCAAATTTCTTCACACCCAATCCCTATCCTACTCTTCCACAACCGCTCAGTGTGAAGCTCAACGACACAAA
CTTCTTACTCTGGAAAAATCAGTTGCTGAATGCCGTACTCGCCAATGGGTTGTCCGGTTTTCTTGATGGCTCGATTCCAGCTCCTTCCCAATTTCTCGATCAGAATCGCA
CCCAACCAAACCCTGAGTATCTCGGCTGGGAGAGGTATAATCGTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGACGAATGATGAAGGTTCTTCTTCAAAATCCATCTCCAACCAGCAAGATACTCCCATTCATCCCACCACCCCAATAGCAACTCCGACTGGAACCCCCATCCATAACCC
ACCTCAAAATCCCACCTCTGCTGTTCAACCCAACTTTTGCCCTCCTCAAAACCTAAATCGAAGTTTCCAGCCTCAAAATCCTAATCCTAATCCTCCCCTGTATGCTCCCT
TCAATCCAAACACGCCTCCCCCTGGCTTTTATCCTTATCATTATCCACCCCAAACCTCTTATCCCCAGCCCATTTTTCCTCCGAATCAGCCGCAACAGCAGTTTCCTCGC
CCAATGTTTCCTGCTCAACCTCCGCCTTTCCCACCACATCCAAATTTCTTCACACCCAATCCCTATCCTACTCTTCCACAACCGCTCAGTGTGAAGCTCAACGACACAAA
CTTCTTACTCTGGAAAAATCAGTTGCTGAATGCCGTACTCGCCAATGGGTTGTCCGGTTTTCTTGATGGCTCGATTCCAGCTCCTTCCCAATTTCTCGATCAGAATCGCA
CCCAACCAAACCCTGAGTATCTCGGCTGGGAGAGGTATAATCGTTTATAA
Protein sequenceShow/hide protein sequence
MTNDEGSSSKSISNQQDTPIHPTTPIATPTGTPIHNPPQNPTSAVQPNFCPPQNLNRSFQPQNPNPNPPLYAPFNPNTPPPGFYPYHYPPQTSYPQPIFPPNQPQQQFPR
PMFPAQPPPFPPHPNFFTPNPYPTLPQPLSVKLNDTNFLLWKNQLLNAVLANGLSGFLDGSIPAPSQFLDQNRTQPNPEYLGWERYNRL