; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0002375 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002375
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr4:42252450..42254203
RNA-Seq ExpressionLag0002375
SyntenyLag0002375
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48193.1 hypothetical protein EZV62_027487 [Acer yangbiense]2.6e-1728.51Show/hide
Query:  ERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFL------------------------------------
        E A V  I +D +++  ED+   ++ +V+T K +N E FK  + +IWN+ G+V ++  G NTF+                                    
Subjt:  ERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFL------------------------------------

Query:  ---------------------------KWAIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCG
                                   KW   L   IGE V++  E     G+  +R+ V++DI +PLKR L +++G   E T V   YERLP+FC+ CG
Subjt:  ---------------------------KWAIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCG

Query:  TIGHIQQECEAESKSE-----EENLYGEWLRATPI
         IGH  +EC  E         ++  +G W+RATPI
Subjt:  TIGHIQQECEAESKSE-----EENLYGEWLRATPI

TXG60307.1 hypothetical protein EZV62_014880 [Acer yangbiense]7.6e-1731.28Show/hide
Query:  EEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFLKWAIQLGN-----------------------------------SIGEFV
        E+  ED++  ++ +V+  K +N E FK  + +IW+  G V I+    N F+ + I +G+                                    IGE V
Subjt:  EEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFLKWAIQLGN-----------------------------------SIGEFV

Query:  DVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGH-----IQQECEAESKSEEENLYGEWLRATPIL
        D+   E     E  +R+ V+IDI +PLKR L +++G   E T V   YERLPEFC+ CG IGH     I +E    +     N++G WL+A P+L
Subjt:  DVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGH-----IQQECEAESKSEEENLYGEWLRATPIL

XP_021318626.1 uncharacterized protein LOC110436290 [Sorghum bicolor]9.0e-1831.36Show/hide
Query:  LGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATPIL-
        LG  IG F +VD+ E+G +    LRI V IDI +PL RG+ V++G    E W   +YE LP+FCY CG IGHI + C + S+S E   +   LR  P   
Subjt:  LGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATPIL-

Query:  --GGPPRQKPQNPFRGGPW-GRGRGRRAAFQNFREDWSSGRSNRE--NWRRKDPGPDCENARKEGGKVEVSGVNEEAPARGSDYSPGETPTASF------
           G   ++   P   GPW G   G R +F +  + W S +S  +  NWR+       E + + G +V     + E   +G +   G+T  A        
Subjt:  --GGPPRQKPQNPFRGGPW-GRGRGRRAAFQNFREDWSSGRSNRE--NWRRKDPGPDCENARKEGGKVEVSGVNEEAPARGSDYSPGETPTASF------

Query:  -----RSDKGKVVEE--SDQNSAADRGKGKEPEDKGHIRVSLKNKGQNGEK---EYRQTVGIVIKDDSDGMEKSKGKTFDLKHPANT
               DKG ++ E   +++   DR +G        +  S   KG +GEK   E ++ + I  ++  DG++K K  T   K   NT
Subjt:  -----RSDKGKVVEE--SDQNSAADRGKGKEPEDKGHIRVSLKNKGQNGEK---EYRQTVGIVIKDDSDGMEKSKGKTFDLKHPANT

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]5.8e-1733.33Show/hide
Query:  AIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATP
        AIQ+G  +GEF++VDLE +  +    LR+ V+I+I +PL+RG+M+ +G  A+E W   +YE LP+FCY CG IGH  + C  +  + E+  +G  LR  P
Subjt:  AIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATP

Query:  ---ILGGPPRQKPQNPFRG-------GPW------GRGRGRRAAFQNFREDWSSGRSNRENWRRKDPGPDCENARKEGGKVEVSGVNEEAPARGSDYSPG
             GG   +  +N   G       GPW      GRG G R             RS+  +WR+ D G       K  GK +   VN          S  
Subjt:  ---ILGGPPRQKPQNPFRG-------GPW------GRGRGRRAAFQNFREDWSSGRSNRENWRRKDPGPDCENARKEGGKVEVSGVNEEAPARGSDYSPG

Query:  ETPTASFRSDKGKVVEE-------SDQNSAADRGKGKEPEDKG
        + P    + DK K   E        D+  AA  G GK  E+KG
Subjt:  ETPTASFRSDKGKVVEE-------SDQNSAADRGKGKEPEDKG

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]6.9e-1833.74Show/hide
Query:  AIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATP
        AIQ+G  +GEF++VDLE +  +    LR+ V+I+I +PL+RG+M+ +G  A+E W   +YE LP+FCY CG IGH  + C  +  +EE+  +G  LR  P
Subjt:  AIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEEENLYGEWLRATP

Query:  ---ILGGPPRQKPQNPFRG-------GPW------GRGRGRRAAFQNFREDWSSGRSNRENWRRKDPGPDCENARKEGGKVEVSGVNEEAPARGSDYSPG
             GG   +  +N   G       GPW      GRG G R             RS+  +WR+ D G   E  R +G + EV+             S  
Subjt:  ---ILGGPPRQKPQNPFRG-------GPW------GRGRGRRAAFQNFREDWSSGRSNRENWRRKDPGPDCENARKEGGKVEVSGVNEEAPARGSDYSPG

Query:  ETPTASFRSDKGKVVEE-------SDQNSAADRGKGKEPEDKG
        + P    + DK K   E        D+  AA  G GK  E+KG
Subjt:  ETPTASFRSDKGKVVEE-------SDQNSAADRGKGKEPEDKG

TrEMBL top hitse value%identityAlignment
A0A1Z5S941 CCHC-type domain-containing protein1.1e-1640Show/hide
Query:  LGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEEE---NLYGEWLRATP
        LGN IG  + VD E++G +    LRI VKIDI +PL RG+++      ++ W    YE LP FCYGCG +GH+++EC  +S  EEE     +G+WLR TP
Subjt:  LGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEEE---NLYGEWLRATP

Query:  IL---GGPPRQKPQNPFRGGPWGRGRGRRAAFQNFREDWS
              G  RQ+       G    GR R +   +F +D S
Subjt:  IL---GGPPRQKPQNPFRGGPWGRGRGRRAAFQNFREDWS

A0A2N9GHD2 CCHC-type domain-containing protein9.7e-1829.29Show/hide
Query:  AEEVADKLEKMKITIAERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFL----------KWAIQLGNSI
        AEE+A+  ++M+++ +E++  + +    ++++ ++ + ++L R++T +  N E FK  +  +W     + I+    N F+          +    +GN I
Subjt:  AEEVADKLEKMKITIAERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFL----------KWAIQLGNSI

Query:  GEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQEC-EAESKSEEENL----YGEWLRATPI
        G  ++VD+ E+G + +  LRI V++DI  PL RG ++      +  WV   YE LP FCY CG +GH   EC E      + N+    +G WLRA P+
Subjt:  GEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQEC-EAESKSEEENL----YGEWLRATPI

A0A5C7GU64 CCHC-type domain-containing protein1.3e-1728.51Show/hide
Query:  ERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFL------------------------------------
        E A V  I +D +++  ED+   ++ +V+T K +N E FK  + +IWN+ G+V ++  G NTF+                                    
Subjt:  ERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFL------------------------------------

Query:  ---------------------------KWAIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCG
                                   KW   L   IGE V++  E     G+  +R+ V++DI +PLKR L +++G   E T V   YERLP+FC+ CG
Subjt:  ---------------------------KWAIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCG

Query:  TIGHIQQECEAESKSE-----EENLYGEWLRATPI
         IGH  +EC  E         ++  +G W+RATPI
Subjt:  TIGHIQQECEAESKSE-----EENLYGEWLRATPI

A0A5C7HT75 Uncharacterized protein3.7e-1731.28Show/hide
Query:  EEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFLKWAIQLGN-----------------------------------SIGEFV
        E+  ED++  ++ +V+  K +N E FK  + +IW+  G V I+    N F+ + I +G+                                    IGE V
Subjt:  EEATEDLQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFLKWAIQLGN-----------------------------------SIGEFV

Query:  DVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGH-----IQQECEAESKSEEENLYGEWLRATPIL
        D+   E     E  +R+ V+IDI +PLKR L +++G   E T V   YERLPEFC+ CG IGH     I +E    +     N++G WL+A P+L
Subjt:  DVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGH-----IQQECEAESKSEEENLYGEWLRATPIL

A0A5C7I3H2 CCHC-type domain-containing protein1.8e-1632.09Show/hide
Query:  MKITIAERAKVVAIEDDDL------EEATED----LQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFL--KWAIQLGNSIGEFVDVDL
        M+  IA+  + +++ D+D+      EE   D    +   ++ +V++ K +N E FK  + ++WN+ G V I+  G N F+  KW   L   +GE +++ +
Subjt:  MKITIAERAKVVAIEDDDL------EEATED----LQGAVLCRVITLKLINPEIFKTFMPKIWNKEGRVRIKPKGRNTFL--KWAIQLGNSIGEFVDVDL

Query:  EEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQEC-EAESK----SEEENLYGEWLRA
        E +   G+  +R+ V I+I +PLKR L +++        V   YERLP+FCY CG IGH+ ++C + E+K    S     +G W+RA
Subjt:  EEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQEC-EAESK----SEEENLYGEWLRA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G36228.1 nucleic acid binding;zinc ion binding5.5e-0529.41Show/hide
Query:  LGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEE
        + +++GE V +D  EE  S    +R+ V++D  +PL+    VR  S+ E   +   YE+L   C  C  + H    C      EE
Subjt:  LGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAESKSEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGACAACCTGTAAGCAAGAAGGGCAGCTACATGCTGCAAAAGGGATTCCTGAGTGACCAAGGTAGCGAAGAAAAAGAAGACACACAAACAAACATGGATAACCA
GGATATGGAGATGGAGACGGCAAACGACAAAGATAAGGAAAATCCAAAAAATACAGCAGAAGAGGTTGCAGACAAACTCGAAAAAATGAAGATAACAATCGCAGAAAGAG
CCAAAGTAGTGGCTATTGAGGATGACGACCTTGAGGAAGCGACAGAAGACCTCCAAGGGGCAGTATTATGCAGAGTGATCACTTTAAAGCTTATCAATCCAGAAATTTTC
AAAACATTCATGCCAAAAATATGGAATAAGGAAGGAAGAGTGCGCATAAAGCCCAAGGGCAGAAACACCTTCTTGAAATGGGCGATTCAACTAGGCAATTCAATTGGAGA
ATTCGTTGATGTGGATCTCGAGGAAGAAGGAGGCAGCGGGGAAAACACCCTGAGAATCTTGGTGAAAATCGACATAATGCAACCGTTAAAGAGAGGGCTAATGGTCAGAA
TAGGATCCAAAGCAGAGGAAACTTGGGTAAAGGCATCTTATGAACGTCTCCCAGAATTCTGCTATGGTTGCGGCACGATAGGGCATATTCAACAAGAGTGCGAAGCAGAG
AGCAAGAGCGAGGAAGAAAACCTGTATGGAGAATGGTTGAGAGCAACTCCTATTCTCGGAGGTCCGCCGAGGCAAAAACCTCAAAATCCCTTCAGGGGCGGCCCTTGGGG
AAGGGGAAGAGGGCGAAGAGCAGCGTTCCAGAATTTTAGAGAGGATTGGAGCTCGGGCAGAAGCAACAGAGAAAACTGGAGAAGAAAAGACCCTGGACCAGATTGTGAAA
ACGCCCGCAAAGAAGGAGGAAAAGTTGAAGTTTCCGGCGTAAACGAAGAGGCTCCGGCGAGAGGCTCCGATTACAGTCCAGGCGAAACTCCAACGGCTAGTTTTAGGTCA
GATAAAGGAAAGGTTGTAGAAGAGTCAGACCAAAACAGTGCAGCAGATAGGGGAAAAGGAAAAGAACCAGAGGATAAAGGTCATATCAGAGTCTCTCTTAAGAATAAAGG
ACAAAATGGGGAAAAAGAGTACAGACAGACAGTGGGGATTGTGATTAAGGACGACAGTGATGGAATGGAAAAGTCAAAAGGAAAAACGTTCGACCTAAAGCATCCAGCCA
ATACTAGGCCAACTTTTGGCAATGGGCCACTTGGGCCAAATAAAGAGATTATAAGGGCCATAAAGCAAATCGATCAGAAAGAAAAAAAAGGGACAATAGAACCCGGAGGC
CCCCTCGGACAGGAGAATAGAGAGGAACAGGGGAAAAACTTAAGAAAGTGGAAGAGGAGGGCCAGATGTGACTCGGGAAAAGCCTATTCACAAAGCAATTCAGACATATT
GATGAGTATGGAGAAGAGAAAACTGGAAAATAGTGCCCAAGGAGAGGAAAAGGAATTAGTTAAAAAAAAACAGTGCATACCTTACTTCGAGGTCGACGAAGGGATATCGG
CGGAGGCTGAAATTCAGCCCCGCCGGACGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGACAACCTGTAAGCAAGAAGGGCAGCTACATGCTGCAAAAGGGATTCCTGAGTGACCAAGGTAGCGAAGAAAAAGAAGACACACAAACAAACATGGATAACCA
GGATATGGAGATGGAGACGGCAAACGACAAAGATAAGGAAAATCCAAAAAATACAGCAGAAGAGGTTGCAGACAAACTCGAAAAAATGAAGATAACAATCGCAGAAAGAG
CCAAAGTAGTGGCTATTGAGGATGACGACCTTGAGGAAGCGACAGAAGACCTCCAAGGGGCAGTATTATGCAGAGTGATCACTTTAAAGCTTATCAATCCAGAAATTTTC
AAAACATTCATGCCAAAAATATGGAATAAGGAAGGAAGAGTGCGCATAAAGCCCAAGGGCAGAAACACCTTCTTGAAATGGGCGATTCAACTAGGCAATTCAATTGGAGA
ATTCGTTGATGTGGATCTCGAGGAAGAAGGAGGCAGCGGGGAAAACACCCTGAGAATCTTGGTGAAAATCGACATAATGCAACCGTTAAAGAGAGGGCTAATGGTCAGAA
TAGGATCCAAAGCAGAGGAAACTTGGGTAAAGGCATCTTATGAACGTCTCCCAGAATTCTGCTATGGTTGCGGCACGATAGGGCATATTCAACAAGAGTGCGAAGCAGAG
AGCAAGAGCGAGGAAGAAAACCTGTATGGAGAATGGTTGAGAGCAACTCCTATTCTCGGAGGTCCGCCGAGGCAAAAACCTCAAAATCCCTTCAGGGGCGGCCCTTGGGG
AAGGGGAAGAGGGCGAAGAGCAGCGTTCCAGAATTTTAGAGAGGATTGGAGCTCGGGCAGAAGCAACAGAGAAAACTGGAGAAGAAAAGACCCTGGACCAGATTGTGAAA
ACGCCCGCAAAGAAGGAGGAAAAGTTGAAGTTTCCGGCGTAAACGAAGAGGCTCCGGCGAGAGGCTCCGATTACAGTCCAGGCGAAACTCCAACGGCTAGTTTTAGGTCA
GATAAAGGAAAGGTTGTAGAAGAGTCAGACCAAAACAGTGCAGCAGATAGGGGAAAAGGAAAAGAACCAGAGGATAAAGGTCATATCAGAGTCTCTCTTAAGAATAAAGG
ACAAAATGGGGAAAAAGAGTACAGACAGACAGTGGGGATTGTGATTAAGGACGACAGTGATGGAATGGAAAAGTCAAAAGGAAAAACGTTCGACCTAAAGCATCCAGCCA
ATACTAGGCCAACTTTTGGCAATGGGCCACTTGGGCCAAATAAAGAGATTATAAGGGCCATAAAGCAAATCGATCAGAAAGAAAAAAAAGGGACAATAGAACCCGGAGGC
CCCCTCGGACAGGAGAATAGAGAGGAACAGGGGAAAAACTTAAGAAAGTGGAAGAGGAGGGCCAGATGTGACTCGGGAAAAGCCTATTCACAAAGCAATTCAGACATATT
GATGAGTATGGAGAAGAGAAAACTGGAAAATAGTGCCCAAGGAGAGGAAAAGGAATTAGTTAAAAAAAAACAGTGCATACCTTACTTCGAGGTCGACGAAGGGATATCGG
CGGAGGCTGAAATTCAGCCCCGCCGGACGCCATGA
Protein sequenceShow/hide protein sequence
MEGQPVSKKGSYMLQKGFLSDQGSEEKEDTQTNMDNQDMEMETANDKDKENPKNTAEEVADKLEKMKITIAERAKVVAIEDDDLEEATEDLQGAVLCRVITLKLINPEIF
KTFMPKIWNKEGRVRIKPKGRNTFLKWAIQLGNSIGEFVDVDLEEEGGSGENTLRILVKIDIMQPLKRGLMVRIGSKAEETWVKASYERLPEFCYGCGTIGHIQQECEAE
SKSEEENLYGEWLRATPILGGPPRQKPQNPFRGGPWGRGRGRRAAFQNFREDWSSGRSNRENWRRKDPGPDCENARKEGGKVEVSGVNEEAPARGSDYSPGETPTASFRS
DKGKVVEESDQNSAADRGKGKEPEDKGHIRVSLKNKGQNGEKEYRQTVGIVIKDDSDGMEKSKGKTFDLKHPANTRPTFGNGPLGPNKEIIRAIKQIDQKEKKGTIEPGG
PLGQENREEQGKNLRKWKRRARCDSGKAYSQSNSDILMSMEKRKLENSAQGEEKELVKKKQCIPYFEVDEGISAEAEIQPRRTP