CuGenDBv2

Gene ID	Lag0002383
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	F-box/kelch-repeat protein SKIP30-like
Genome location	chr4:42298830..42299549
RNA-Seq Expression	Lag0002383
Synteny	Lag0002383
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR015915 - Kelch-type beta propeller

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0064055.1 F-box/kelch-repeat protein SKIP30-like [Cucumis melo var. makuwa]

1.1e-15

32.59

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Query:  WITLPRLPTTRKQHFGVVSTSQKLFVLGGYNL-----------------ILDPLTR--------------------------------------------
        W+TLP LP  RK +FGVVST QKLF+LGG  +                   +P+TR                                            
Subjt:  WITLPRLPTTRKQHFGVVSTSQKLFVLGGYNL-----------------ILDPLTR--------------------------------------------

Query:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ
                        DSG  +  VVGRKM  ++   PIV TFD++E +W+V+     DY  F +I  +   +D +YIM+  YIF Q G D KV + A Q
Subjt:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ

Query:  FHPRSRMAMIYFGGKLYVSGGLLH
        FH    M MI F G+LYV GG L+
Subjt:  FHPRSRMAMIYFGGKLYVSGGLLH

KGN44795.1 hypothetical protein Csa_015560 [Cucumis sativus]

3.8e-16

33.93

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Query:  WITLPRLPTTRKQHFGVVSTSQKLFVLGG--YNLI---------------LDPLTR--------------------------------------------
        W+TLP LP  RK +FGVVST QKLF+LGG   N I                +P+TR                                            
Subjt:  WITLPRLPTTRKQHFGVVSTSQKLFVLGG--YNLI---------------LDPLTR--------------------------------------------

Query:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ
                        DSG  +  VVGRKM  ++   PIV TFD++E RW+     I+DY  F +I  +   +D +YIM+  YIF Q GQD KV + A Q
Subjt:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ

Query:  FHPRSRMAMIYFGGKLYVSGGLLH
        F+    M MI F G+LYV GG L+
Subjt:  FHPRSRMAMIYFGGKLYVSGGLLH

XP_008451325.1 PREDICTED: F-box/kelch-repeat protein SKIP30-like [Cucumis melo]

1.1e-15

32.59

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Query:  WITLPRLPTTRKQHFGVVSTSQKLFVLGGYNL-----------------ILDPLTR--------------------------------------------
        W+TLP LP  RK +FGVVST QKLF+LGG  +                   +P+TR                                            
Subjt:  WITLPRLPTTRKQHFGVVSTSQKLFVLGGYNL-----------------ILDPLTR--------------------------------------------

Query:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ
                        DSG  +  VVGRKM  ++   PIV TFD++E +W+V+     DY  F +I  +   +D +YIM+  YIF Q G D KV + A Q
Subjt:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ

Query:  FHPRSRMAMIYFGGKLYVSGGLLH
        FH    M MI F G+LYV GG L+
Subjt:  FHPRSRMAMIYFGGKLYVSGGLLH

XP_011659773.1 F-box/kelch-repeat protein SKIP30 [Cucumis sativus]

3.8e-16

33.93

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Query:  WITLPRLPTTRKQHFGVVSTSQKLFVLGG--YNLI---------------LDPLTR--------------------------------------------
        W+TLP LP  RK +FGVVST QKLF+LGG   N I                +P+TR                                            
Subjt:  WITLPRLPTTRKQHFGVVSTSQKLFVLGG--YNLI---------------LDPLTR--------------------------------------------

Query:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ
                        DSG  +  VVGRKM  ++   PIV TFD++E RW+     I+DY  F +I  +   +D +YIM+  YIF Q GQD KV + A Q
Subjt:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ

Query:  FHPRSRMAMIYFGGKLYVSGGLLH
        F+    M MI F G+LYV GG L+
Subjt:  FHPRSRMAMIYFGGKLYVSGGLLH

XP_038896848.1 F-box/kelch-repeat protein SKIP30-like [Benincasa hispida]

1.5e-15

33.48

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Query:  WITLPRLPTTRKQHFGVVSTSQKLFVLGG--YNLI---------------LDPLTR--------------------------------------------
        W+TLP LP  RK +FGVVST QKLF+LGG   N I                +P+TR                                            
Subjt:  WITLPRLPTTRKQHFGVVSTSQKLFVLGG--YNLI---------------LDPLTR--------------------------------------------

Query:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ
                        DSG  +  VVGRK+  ++   PIV TFDS+E RW+V+     DY  F +I  +   +D +YIM+  YIF Q GQ+ KV + A Q
Subjt:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ

Query:  FHPRSRMAMIYFGGKLYVSGGLLH
        F+    M MI F G+LYV GG L+
Subjt:  FHPRSRMAMIYFGGKLYVSGGLLH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K4Y2 F-box domain-containing protein

1.9e-16

33.93

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Query:  WITLPRLPTTRKQHFGVVSTSQKLFVLGG--YNLI---------------LDPLTR--------------------------------------------
        W+TLP LP  RK +FGVVST QKLF+LGG   N I                +P+TR                                            
Subjt:  WITLPRLPTTRKQHFGVVSTSQKLFVLGG--YNLI---------------LDPLTR--------------------------------------------

Query:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ
                        DSG  +  VVGRKM  ++   PIV TFD++E RW+     I+DY  F +I  +   +D +YIM+  YIF Q GQD KV + A Q
Subjt:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ

Query:  FHPRSRMAMIYFGGKLYVSGGLLH
        F+    M MI F G+LYV GG L+
Subjt:  FHPRSRMAMIYFGGKLYVSGGLLH

A0A1S3BR74 F-box/kelch-repeat protein SKIP30-like

5.4e-16

32.59

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Query:  WITLPRLPTTRKQHFGVVSTSQKLFVLGGYNL-----------------ILDPLTR--------------------------------------------
        W+TLP LP  RK +FGVVST QKLF+LGG  +                   +P+TR                                            
Subjt:  WITLPRLPTTRKQHFGVVSTSQKLFVLGGYNL-----------------ILDPLTR--------------------------------------------

Query:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ
                        DSG  +  VVGRKM  ++   PIV TFD++E +W+V+     DY  F +I  +   +D +YIM+  YIF Q G D KV + A Q
Subjt:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ

Query:  FHPRSRMAMIYFGGKLYVSGGLLH
        FH    M MI F G+LYV GG L+
Subjt:  FHPRSRMAMIYFGGKLYVSGGLLH

A0A5A7V6S8 F-box/kelch-repeat protein SKIP30-like

2.4e-11

29.82

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Query:  WITLPRLPTTRKQ--HFGVVSTSQKLFVLGGYNLILDPLTRD--------------------------------------SGTALVVG---------RKM
        W+TLP LP+ R    +F  VSTSQKLFVLGG ++ +DP+T D                                       G  +V G          K 
Subjt:  WITLPRLPTTRKQ--HFGVVSTSQKLFVLGGYNLILDPLTRD--------------------------------------SGTALVVG---------RKM

Query:  QVFSSDPIVYT----------------------------------FDSLECRWSVDTVKIKDYRRFYIDCVAVAQDSLYIM--TNEYIFKQDGQDYKVFV
        +++ S+  V+T                                   DSLE +W     +++DY  +     AV  DSLY+M  T   +FKQ G+ +KVFV
Subjt:  QVFSSDPIVYT----------------------------------FDSLECRWSVDTVKIKDYRRFYIDCVAVAQDSLYIM--TNEYIFKQDGQDYKVFV

Query:  LASQFHPRSRMAMIYFGGKLYVSGGLLH
        LA+QF  R  MA++ F G LY  GG++H
Subjt:  LASQFHPRSRMAMIYFGGKLYVSGGLLH

A0A5D3DRI4 F-box/kelch-repeat protein SKIP30-like

5.4e-16

32.59

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Query:  WITLPRLPTTRKQHFGVVSTSQKLFVLGGYNL-----------------ILDPLTR--------------------------------------------
        W+TLP LP  RK +FGVVST QKLF+LGG  +                   +P+TR                                            
Subjt:  WITLPRLPTTRKQHFGVVSTSQKLFVLGGYNL-----------------ILDPLTR--------------------------------------------

Query:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ
                        DSG  +  VVGRKM  ++   PIV TFD++E +W+V+     DY  F +I  +   +D +YIM+  YIF Q G D KV + A Q
Subjt:  ----------------DSGTAL--VVGRKMQ-VFSSDPIVYTFDSLECRWSVDTVKIKDYRRF-YIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQ

Query:  FHPRSRMAMIYFGGKLYVSGGLLH
        FH    M MI F G+LYV GG L+
Subjt:  FHPRSRMAMIYFGGKLYVSGGLLH

A0A6J1D7Q9 F-box/kelch-repeat protein SKIP30-like

6.2e-12

30.84

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Query:  LWITLPRLPTTRK--QHFGVVSTSQKLFVLGGYNLILDPLTRDSGTAL----------------------------------------------------
        LWITLP LP+ R+   HFG  STSQ LFVLGG +  +DPLT D    L                                                    
Subjt:  LWITLPRLPTTRK--QHFGVVSTSQKLFVLGGYNLILDPLTRDSGTAL----------------------------------------------------

Query:  ----------------------------VVGRKMQV-FSSDPIVYTFDSLECRWSVDTVKIKDYRRFYIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVL
                                    V+G K+ + +     V  FD+LE +W     +++DY  +    +A  QDSLY+M    IFKQDG+D +V + 
Subjt:  ----------------------------VVGRKMQV-FSSDPIVYTFDSLECRWSVDTVKIKDYRRFYIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVL

Query:  A-SQFHPRSRMAMIYFGGKLYVSGGLL
        A SQF  R  MAMI F G+LYV GG++
Subjt:  A-SQFHPRSRMAMIYFGGKLYVSGGLL

SwissProt top hits

e value

%identity

Alignment

Q9M1W7 F-box/kelch-repeat protein SKIP30

1.4e-05

24.55

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Query:  WITLPRLPTTRKQ--HFGVVSTSQKLFVLGGYNLILDPLTRD-SGT--------------------ALVVGRKM--------------------------
        W+TLP LP+  +   HFG V+T+  LFVLGG +  + P+T D  GT                    +++V R M                          
Subjt:  WITLPRLPTTRKQ--HFGVVSTSQKLFVLGGYNLILDPLTRD-SGT--------------------ALVVGRKM--------------------------

Query:  -------QVFSSDPIVYTFDSLECRWSV------------------DTVK----IKDYRRFYIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQFHP
                V++S P ++   +  C   V                  ++VK    +KDY  +    + V +D LY+M++  +FKQ+G  +K+   AS+F  
Subjt:  -------QVFSSDPIVYTFDSLECRWSV------------------DTVK----IKDYRRFYIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQFHP

Query:  RSRMAMIYFGGKLYVSGGLL
        R  MAM     ++ + GG++
Subjt:  RSRMAMIYFGGKLYVSGGLL

Arabidopsis top hits

e value

%identity

Alignment

AT3G63220.1 Galactose oxidase/kelch repeat superfamily protein

1.0e-06

24.55

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Query:  WITLPRLPTTRKQ--HFGVVSTSQKLFVLGGYNLILDPLTRD-SGT--------------------ALVVGRKM--------------------------
        W+TLP LP+  +   HFG V+T+  LFVLGG +  + P+T D  GT                    +++V R M                          
Subjt:  WITLPRLPTTRKQ--HFGVVSTSQKLFVLGGYNLILDPLTRD-SGT--------------------ALVVGRKM--------------------------

Query:  -------QVFSSDPIVYTFDSLECRWSV------------------DTVK----IKDYRRFYIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQFHP
                V++S P ++   +  C   V                  ++VK    +KDY  +    + V +D LY+M++  +FKQ+G  +K+   AS+F  
Subjt:  -------QVFSSDPIVYTFDSLECRWSV------------------DTVK----IKDYRRFYIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQFHP

Query:  RSRMAMIYFGGKLYVSGGLL
        R  MAM     ++ + GG++
Subjt:  RSRMAMIYFGGKLYVSGGLL

AT3G63220.2 Galactose oxidase/kelch repeat superfamily protein

1.0e-06

24.55

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Query:  WITLPRLPTTRKQ--HFGVVSTSQKLFVLGGYNLILDPLTRD-SGT--------------------ALVVGRKM--------------------------
        W+TLP LP+  +   HFG V+T+  LFVLGG +  + P+T D  GT                    +++V R M                          
Subjt:  WITLPRLPTTRKQ--HFGVVSTSQKLFVLGGYNLILDPLTRD-SGT--------------------ALVVGRKM--------------------------

Query:  -------QVFSSDPIVYTFDSLECRWSV------------------DTVK----IKDYRRFYIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQFHP
                V++S P ++   +  C   V                  ++VK    +KDY  +    + V +D LY+M++  +FKQ+G  +K+   AS+F  
Subjt:  -------QVFSSDPIVYTFDSLECRWSV------------------DTVK----IKDYRRFYIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQFHP

Query:  RSRMAMIYFGGKLYVSGGLL
        R  MAM     ++ + GG++
Subjt:  RSRMAMIYFGGKLYVSGGLL

Sequences

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CDS sequence

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ATGAAGTTGCCCTTCGATGCCTCGCTTTTGTTCCCTTTTTCCTTCTCCCTAAGTTGGAACCTGTTTCTCGCTCGTGGAAAGCTGCCATTCGTAGTGTTGAACTGTTCAAA
GCTCGACAGGAGGTTGGTTCATTGGTGGATTTACTATGTGTATGCTATTACGATAAAGATAATGCCTGGCAGCTTTATGATCCTTTGGATCACCCTCCCTCGACTTCCAA
CGACAAGAAAGCAACATTTTGGTGTCGTCTCCACTTCTCAAAAGCTGTTTGTTCTTGGTGGTTACAACTTAATTCTTGATCCATTGACTCGTGATTCAGGGACTGCATTA
GTGGTTGGAAGAAAAATGCAAGTATTCTCCAGTGACCCCATAGTGTATACATTTGACAGTCTGGAGTGTAGGTGGAGTGTTGACACTGTTAAGATTAAGGATTACAGAAG
GTTTTACATCGACTGCGTGGCTGTTGCTCAAGATTCACTCTACATCATGACCAATGAATACATCTTCAAACAGGATGGACAAGACTACAAAGTTTTTGTTTTGGCAAGTC
AATTTCATCCCAGATCTAGGATGGCGATGATCTATTTTGGAGGCAAACTGTATGTGAGTGGAGGATTACTTCACCACCCGAGCTTTCCTCCGCCGAATTGTAGTACAGAA
TCATCCCCAAAAATCTCAGTTAGAGATTTTACCGGAAGCCACTGGCAGAACATCTGGTAA

mRNA sequence

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Protein sequence

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MKLPFDASLLFPFSFSLSWNLFLARGKLPFVVLNCSKLDRRLVHWWIYYVYAITIKIMPGSFMILWITLPRLPTTRKQHFGVVSTSQKLFVLGGYNLILDPLTRDSGTAL
VVGRKMQVFSSDPIVYTFDSLECRWSVDTVKIKDYRRFYIDCVAVAQDSLYIMTNEYIFKQDGQDYKVFVLASQFHPRSRMAMIYFGGKLYVSGGLLHHPSFPPPNCSTE
SSPKISVRDFTGSHWQNIW

Lag0002383 (gene) of Sponge gourd (AG-4) v1 genome