; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0002410 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002410
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr4:42611206..42612023
RNA-Seq ExpressionLag0002410
SyntenyLag0002410
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035680.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1458.44Show/hide
Query:  EFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKMEIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        EF M     G++  R  Y    +D+KMK+D+PTYNGK +IESFL+WI++ ENFF YM TP+ KKV LVALKLKGG S
Subjt:  EFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKMEIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

KAA0054966.1 transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa]2.9e-1429.49Show/hide
Query:  KEAEATPVLSPQETTARLLPVEDDVREIKKILKLIWEKIGMQTEQLAISQHE-------------GRAKFQQERCFDEQKTAQDWVAAPTKYQEWEMAHK
        +EA  TP+LSP+ ++  L  VE  + EI+++L  +  ++  +  QL     E             G   F+ +R F E+   +D    P   ++  +  +
Subjt:  KEAEATPVLSPQETTARLLPVEDDVREIKKILKLIWEKIGMQTEQLAISQHE-------------GRAKFQQERCFDEQKTAQDWVAAPTKYQEWEMAHK

Query:  RYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLERKENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKMEIESF
          +E  EN         S SS E D +    +++H RY   ER++                               ++ +++KMK+D+P+Y+GK  IE+F
Subjt:  RYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLERKENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKMEIESF

Query:  LEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        L+W+++ ENFF YM T + KKV LVALKLKGG S
Subjt:  LEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

KAA0061454.1 reverse transcriptase [Cucumis melo var. makuwa]6.4e-1467.27Show/hide
Query:  NDFKMKVDIPTYNGKMEIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        +D+KMK+D+PTYNGK +IESFL+WI+++ENFF+YM+TP+ KK+ LVALKL GG S
Subjt:  NDFKMKVDIPTYNGKMEIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

XP_022138327.1 uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]6.2e-1732.64Show/hide
Query:  KVPTNVSGDPSLVDKEAEATPVLSPQETTARLLPVEDDVREIKKILKLI---WEKIGMQTEQLAISQHEGRAKFQQERCFDEQKTAQDWVAAPTKYQEWE
        K   N S  P++   ++    +LSP+ TT RLL +ED + E++  ++ I    E +G Q E +   Q   +   Q     DE    ++    P   +  +
Subjt:  KVPTNVSGDPSLVDKEAEATPVLSPQETTARLLPVEDDVREIKKILKLI---WEKIGMQTEQLAISQHEGRAKFQQERCFDEQKTAQDWVAAPTKYQEWE

Query:  MAHKRYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLER-KENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKM
          ++R QEL         QE S+ S   D +     QQHPR+   E   E  G+                               DFKMK+D+PT+NGKM
Subjt:  MAHKRYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLER-KENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKM

Query:  EIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        ++E+FL+ +++VENFFDY NTPE KKVKLVA K++ G S
Subjt:  EIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

XP_022138328.1 uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]6.2e-1732.64Show/hide
Query:  KVPTNVSGDPSLVDKEAEATPVLSPQETTARLLPVEDDVREIKKILKLI---WEKIGMQTEQLAISQHEGRAKFQQERCFDEQKTAQDWVAAPTKYQEWE
        K   N S  P++   ++    +LSP+ TT RLL +ED + E++  ++ I    E +G Q E +   Q   +   Q     DE    ++    P   +  +
Subjt:  KVPTNVSGDPSLVDKEAEATPVLSPQETTARLLPVEDDVREIKKILKLI---WEKIGMQTEQLAISQHEGRAKFQQERCFDEQKTAQDWVAAPTKYQEWE

Query:  MAHKRYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLER-KENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKM
          ++R QEL         QE S+ S   D +     QQHPR+   E   E  G+                               DFKMK+D+PT+NGKM
Subjt:  MAHKRYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLER-KENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKM

Query:  EIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        ++E+FL+ +++VENFFDY NTPE KKVKLVA K++ G S
Subjt:  EIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

TrEMBL top hitse value%identityAlignment
A0A5A7SXB6 Reverse transcriptase6.2e-1558.44Show/hide
Query:  EFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKMEIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        EF M     G++  R  Y    +D+KMK+D+PTYNGK +IESFL+WI++ ENFF YM TP+ KKV LVALKLKGG S
Subjt:  EFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKMEIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

A0A5D3CH16 Reverse transcriptase3.1e-1467.27Show/hide
Query:  NDFKMKVDIPTYNGKMEIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        +D+KMK+D+PTYNGK +IESFL+WI+++ENFF+YM+TP+ KK+ LVALKL GG S
Subjt:  NDFKMKVDIPTYNGKMEIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

A0A5D3DGR0 Reverse transcriptase1.4e-1429.49Show/hide
Query:  KEAEATPVLSPQETTARLLPVEDDVREIKKILKLIWEKIGMQTEQLAISQHE-------------GRAKFQQERCFDEQKTAQDWVAAPTKYQEWEMAHK
        +EA  TP+LSP+ ++  L  VE  + EI+++L  +  ++  +  QL     E             G   F+ +R F E+   +D    P   ++  +  +
Subjt:  KEAEATPVLSPQETTARLLPVEDDVREIKKILKLIWEKIGMQTEQLAISQHE-------------GRAKFQQERCFDEQKTAQDWVAAPTKYQEWEMAHK

Query:  RYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLERKENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKMEIESF
          +E  EN         S SS E D +    +++H RY   ER++                               ++ +++KMK+D+P+Y+GK  IE+F
Subjt:  RYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLERKENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKMEIESF

Query:  LEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        L+W+++ ENFF YM T + KKV LVALKLKGG S
Subjt:  LEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X13.0e-1732.64Show/hide
Query:  KVPTNVSGDPSLVDKEAEATPVLSPQETTARLLPVEDDVREIKKILKLI---WEKIGMQTEQLAISQHEGRAKFQQERCFDEQKTAQDWVAAPTKYQEWE
        K   N S  P++   ++    +LSP+ TT RLL +ED + E++  ++ I    E +G Q E +   Q   +   Q     DE    ++    P   +  +
Subjt:  KVPTNVSGDPSLVDKEAEATPVLSPQETTARLLPVEDDVREIKKILKLI---WEKIGMQTEQLAISQHEGRAKFQQERCFDEQKTAQDWVAAPTKYQEWE

Query:  MAHKRYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLER-KENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKM
          ++R QEL         QE S+ S   D +     QQHPR+   E   E  G+                               DFKMK+D+PT+NGKM
Subjt:  MAHKRYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLER-KENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKM

Query:  EIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        ++E+FL+ +++VENFFDY NTPE KKVKLVA K++ G S
Subjt:  EIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

A0A6J1CCQ8 uncharacterized protein LOC111009540 isoform X23.0e-1732.64Show/hide
Query:  KVPTNVSGDPSLVDKEAEATPVLSPQETTARLLPVEDDVREIKKILKLI---WEKIGMQTEQLAISQHEGRAKFQQERCFDEQKTAQDWVAAPTKYQEWE
        K   N S  P++   ++    +LSP+ TT RLL +ED + E++  ++ I    E +G Q E +   Q   +   Q     DE    ++    P   +  +
Subjt:  KVPTNVSGDPSLVDKEAEATPVLSPQETTARLLPVEDDVREIKKILKLI---WEKIGMQTEQLAISQHEGRAKFQQERCFDEQKTAQDWVAAPTKYQEWE

Query:  MAHKRYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLER-KENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKM
          ++R QEL         QE S+ S   D +     QQHPR+   E   E  G+                               DFKMK+D+PT+NGKM
Subjt:  MAHKRYQELKENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLER-KENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKM

Query:  EIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS
        ++E+FL+ +++VENFFDY NTPE KKVKLVA K++ G S
Subjt:  EIESFLEWIRHVENFFDYMNTPETKKVKLVALKLKGGVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACCAAGAAAGTCCCGACTAATGTAAGTGGAGACCCTTCTTTGGTTGATAAAGAGGCGGAAGCTACCCCCGTCCTCTCACCACAAGAGACAACTGCACGCTTGCT
GCCAGTTGAAGACGACGTGCGTGAGATCAAGAAAATTCTGAAGCTAATATGGGAAAAGATTGGCATGCAGACCGAACAATTGGCAATAAGCCAGCATGAAGGCAGAGCCA
AATTCCAGCAAGAAAGGTGTTTTGATGAACAAAAGACAGCCCAAGATTGGGTGGCAGCTCCAACAAAATACCAAGAATGGGAAATGGCACACAAAAGATACCAAGAACTT
AAGGAAAATCCATTATTCCGAAGGTATCAAGAATGGTCAGAATCTTCAAGTGAGGATGATAAAGAACCAAGAATTCCTTATCAACAACATCCAAGGTATGGTCATTTGGA
AAGAAAAGAAAATGCAGGAATTTCTTACCATCCATATGGTCATCCGGAGTTTCCAATGTATGGCCCCCCGGAAGGAAGAGATGATGCAAGAATGTTTTACCCTAAGCAAG
AAAACGATTTCAAAATGAAGGTAGACATCCCAACCTATAATGGTAAAATGGAAATTGAGTCTTTCTTGGAATGGATACGACATGTAGAGAATTTTTTTGATTACATGAAT
ACACCGGAAACCAAGAAAGTAAAATTGGTAGCCCTCAAGTTGAAAGGCGGAGTGTCACGGTCGTACCTTTTCAACCGTGTGGCGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGACAACCAAGAAAGTCCCGACTAATGTAAGTGGAGACCCTTCTTTGGTTGATAAAGAGGCGGAAGCTACCCCCGTCCTCTCACCACAAGAGACAACTGCACGCTTGCT
GCCAGTTGAAGACGACGTGCGTGAGATCAAGAAAATTCTGAAGCTAATATGGGAAAAGATTGGCATGCAGACCGAACAATTGGCAATAAGCCAGCATGAAGGCAGAGCCA
AATTCCAGCAAGAAAGGTGTTTTGATGAACAAAAGACAGCCCAAGATTGGGTGGCAGCTCCAACAAAATACCAAGAATGGGAAATGGCACACAAAAGATACCAAGAACTT
AAGGAAAATCCATTATTCCGAAGGTATCAAGAATGGTCAGAATCTTCAAGTGAGGATGATAAAGAACCAAGAATTCCTTATCAACAACATCCAAGGTATGGTCATTTGGA
AAGAAAAGAAAATGCAGGAATTTCTTACCATCCATATGGTCATCCGGAGTTTCCAATGTATGGCCCCCCGGAAGGAAGAGATGATGCAAGAATGTTTTACCCTAAGCAAG
AAAACGATTTCAAAATGAAGGTAGACATCCCAACCTATAATGGTAAAATGGAAATTGAGTCTTTCTTGGAATGGATACGACATGTAGAGAATTTTTTTGATTACATGAAT
ACACCGGAAACCAAGAAAGTAAAATTGGTAGCCCTCAAGTTGAAAGGCGGAGTGTCACGGTCGTACCTTTTCAACCGTGTGGCGCCATGA
Protein sequenceShow/hide protein sequence
MTTKKVPTNVSGDPSLVDKEAEATPVLSPQETTARLLPVEDDVREIKKILKLIWEKIGMQTEQLAISQHEGRAKFQQERCFDEQKTAQDWVAAPTKYQEWEMAHKRYQEL
KENPLFRRYQEWSESSSEDDKEPRIPYQQHPRYGHLERKENAGISYHPYGHPEFPMYGPPEGRDDARMFYPKQENDFKMKVDIPTYNGKMEIESFLEWIRHVENFFDYMN
TPETKKVKLVALKLKGGVSRSYLFNRVAP