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Lag0002433 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002433
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionycf3-interacting protein 1, chloroplastic
Genome locationchr4:42855266..42856241
RNA-Seq ExpressionLag0002433
SyntenyLag0002433
Gene Ontology termsGO:0048564 - photosystem I assembly (biological process)
GO:0080183 - response to photooxidative stress (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR040340 - Chloroplast enhancing stress tolerance protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581535.1 hypothetical protein SDJN03_21537, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2984.34Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+KKRSKSLYA  TDTGV+PREAAKRLNIDWDTA E+EDADLS+DP+V A VGYGALYIVT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

XP_004134512.1 ycf3-interacting protein 1, chloroplastic isoform X1 [Cucumis sativus]3.7e-3189.16Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+KKRSKSLYAKATDTGV+PREAAKRLNIDWDTA EIEDADLSDDP+V A VGYGALYIVT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

XP_008439415.1 PREDICTED: ycf3-interacting protein 1, chloroplastic isoform X1 [Cucumis melo]2.4e-3086.75Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+K+RSKSLYAKATDTGV+PREAAKRLNIDWDTA EIEDADL DDP+V A VGYGALYIVT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

XP_031742721.1 ycf3-interacting protein 1, chloroplastic isoform X2 [Cucumis sativus]3.7e-3189.16Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+KKRSKSLYAKATDTGV+PREAAKRLNIDWDTA EIEDADLSDDP+V A VGYGALYIVT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

XP_038877519.1 ycf3-interacting protein 1, chloroplastic [Benincasa hispida]1.1e-3087.95Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+KKR KSLYAKATDTGV+PREAAKRLNIDWDTA EIEDADLSDDP+V A VGYGALYIVT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

TrEMBL top hitse value%identityAlignment
A0A0A0KJ48 Uncharacterized protein1.8e-3189.16Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+KKRSKSLYAKATDTGV+PREAAKRLNIDWDTA EIEDADLSDDP+V A VGYGALYIVT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

A0A1S3AYB4 ycf3-interacting protein 1, chloroplastic isoform X11.2e-3086.75Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+K+RSKSLYAKATDTGV+PREAAKRLNIDWDTA EIEDADL DDP+V A VGYGALYIVT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

A0A6J1EC41 ycf3-interacting protein 1, chloroplastic9.9e-3084.34Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+KKRSKSLYA  TDTGV+PREAAKRLNIDWDTA E+EDADLS+DP+V A VGYGALYIVT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

A0A6J1IQU0 ycf3-interacting protein 1, chloroplastic9.9e-3084.34Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+KKRSKSLYA  TDTGV+PREAAKRLNIDWDTA E+EDADLS+DP+V A VGYGALYIVT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

A0A6P6ACF5 ycf3-interacting protein 1, chloroplastic isoform X24.1e-2879.52Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        EAP+KKR KSLYAKATDTG+DP+EAAKRLNIDWD+A EIEDAD+SD+ +V   VGYGALY+VT FP+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

SwissProt top hitse value%identityAlignment
B8AAV3 Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic1.5e-2263.64Show/hide
Query:  KFEAPRKKR--SKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDD-PKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        + EAP+KK    KS+YAKATDTG+DP  AAKRLNIDWD+A +++D +  DD  +V + VGY ALY++T FP+IIGISVVLI+FYNSLQ
Subjt:  KFEAPRKKR--SKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDD-PKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

E5KCJ8 Ycf3-interacting protein 1, chloroplastic1.7e-2367.5Show/hide
Query:  RKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        + K  +SLYAKATDTG+DP+EAAKRL IDWD+A EI+++  SD+P V   +GYGALY+V+ FP+IIGISVVLI+FYNSLQ
Subjt:  RKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

Q5VQK9 Protein CHLOROPLAST ENHANCING STRESS TOLERANCE, chloroplastic1.5e-2263.64Show/hide
Query:  KFEAPRKKR--SKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDD-PKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        + EAP+KK    KS+YAKATDTG+DP  AAKRLNIDWD+A +++D +  DD  +V + VGY ALY++T FP+IIGISVVLI+FYNSLQ
Subjt:  KFEAPRKKR--SKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDD-PKVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

Q9LU01 Ycf3-interacting protein 1, chloroplastic1.1e-2263.1Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDP-KVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        E  +K+R KS+YAK+TDTG+DP+EAAKRLN++WD+A  IE+ D+ D+   V+ V GYGALY V+  P+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDP-KVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ

Arabidopsis top hitse value%identityAlignment
AT5G44650.1 Encodes a chloroplast protein that induces tolerance to multiple environmental stresses and reduces photooxidative damage.8.0e-2463.1Show/hide
Query:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDP-KVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ
        E  +K+R KS+YAK+TDTG+DP+EAAKRLN++WD+A  IE+ D+ D+   V+ V GYGALY V+  P+IIGISVVLI+FYNSLQ
Subjt:  EAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDP-KVSAVVGYGALYIVTGFPMIIGISVVLIIFYNSLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATATCGCTCGTAAACAAAAGGCAGGCTTCAAGCTGTTTCAAAGCAATTGCCGGAAACTATATGAGTTTTGGCGATTCTCTTTGAGAATCCGACAATGCTCACG
AAATAAGTTTGAGGCACCTAGGAAGAAACGCAGTAAATCTTTATATGCAAAAGCCACAGACACGGGTGTGGATCCTCGAGAGGCTGCGAAAAGACTAAACATTGATTGGG
ACACTGCAGTTGAGATCGAAGATGCCGACTTGAGTGATGACCCGAAAGTGTCTGCTGTTGTGGGGTATGGAGCATTGTACATTGTGACAGGTTTCCCAATGATAATTGGC
ATCTCAGTAGTTCTAATCATTTTCTACAATTCTCTTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATATCGCTCGTAAACAAAAGGCAGGCTTCAAGCTGTTTCAAAGCAATTGCCGGAAACTATATGAGTTTTGGCGATTCTCTTTGAGAATCCGACAATGCTCACG
AAATAAGTTTGAGGCACCTAGGAAGAAACGCAGTAAATCTTTATATGCAAAAGCCACAGACACGGGTGTGGATCCTCGAGAGGCTGCGAAAAGACTAAACATTGATTGGG
ACACTGCAGTTGAGATCGAAGATGCCGACTTGAGTGATGACCCGAAAGTGTCTGCTGTTGTGGGGTATGGAGCATTGTACATTGTGACAGGTTTCCCAATGATAATTGGC
ATCTCAGTAGTTCTAATCATTTTCTACAATTCTCTTCAATAG
Protein sequenceShow/hide protein sequence
MEDIARKQKAGFKLFQSNCRKLYEFWRFSLRIRQCSRNKFEAPRKKRSKSLYAKATDTGVDPREAAKRLNIDWDTAVEIEDADLSDDPKVSAVVGYGALYIVTGFPMIIG
ISVVLIIFYNSLQ