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Lag0002480 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002480
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:43237646..43238062
RNA-Seq ExpressionLag0002480
SyntenyLag0002480
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]6.5e-0833.93Show/hide
Query:  VDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQG----VWLEE
        VD LEA+A+ + L +AK   +L +EVE DSA+V  ++  K  + S +G+++++I ++S   +F S  W RRE N++A + A   +E         VWLE+
Subjt:  VDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQG----VWLEE

Query:  TPASLEEVYRSE
         P  +    R +
Subjt:  TPASLEEVYRSE

KAF7835887.1 uncharacterized protein G2W53_010746 [Senna tora]4.2e-0735.9Show/hide
Query:  VQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQ-MAARQVMELDIQG---VW
        +  VD +EA+A+ D L +AK   +L +EVE DSA V  ++     + S +G+++++I  +S      S  W RRE NRVA  +A  QV  LD      VW
Subjt:  VQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQ-MAARQVMELDIQG---VW

Query:  LEETPASLEEVYRSEIL
        LE+ P  +    R ++L
Subjt:  LEETPASLEEVYRSEIL

XP_021739472.1 uncharacterized protein LOC110705848 [Chenopodium quinoa]6.5e-0831.82Show/hide
Query:  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPA
        DVD +EAMA+R +L +A E+G LR+ +ETD+ ++   +  ++ + +  G++ ++I +++   H CS  + +R  N+VA   A+   +     VWLEE P 
Subjt:  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPA

Query:  SLEEVYRSEI
         + EV  +++
Subjt:  SLEEVYRSEI

XP_021748542.1 uncharacterized protein LOC110714345 [Chenopodium quinoa]1.6e-0634.26Show/hide
Query:  DALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASL
        D  EA+A+R +L +A E+G  R+ VETD  ++   V       +E G +V +I  I++G   CS  + +R  NRVA   A+  +  D   VWLEE P  +
Subjt:  DALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPASL

Query:  EEVYRSEI
         E   +++
Subjt:  EEVYRSEI

XP_021763700.1 uncharacterized protein LOC110728362 [Chenopodium quinoa]4.2e-0734.55Show/hide
Query:  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPA
        DVD  EA+A+R +L +  EAG LRL +ET+  ++   ++      +  G +V +I  +SR  HFCS  + +R+ NRVA   A+   +     VWLEE P+
Subjt:  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPA

Query:  SLEEVYRSEI
         + E+  +++
Subjt:  SLEEVYRSEI

TrEMBL top hitse value%identityAlignment
A0A2N9H727 Uncharacterized protein3.5e-0733.06Show/hide
Query:  KLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMEL-DIQG
        K  H V D +AL A+   +++  A E G+   E E D+  +   +R +  + +  G ++ ++   +R +  CS    +RE NRVA M AR+ +EL D   
Subjt:  KLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMEL-DIQG

Query:  VWLEETPASLEEVYRSEILDS
        VWLE+ P+ LE V +SE++ +
Subjt:  VWLEETPASLEEVYRSEILDS

A0A2N9I239 RNase H domain-containing protein2.0e-0733.33Show/hide
Query:  TFMKLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDI
        T  K  H +  VD  EA+A+R+++ +A++ GL+ +EVE DS  +   ++ +Q   +  G ++Q+I+Q++  +        RR  NRVA + AR  + L  
Subjt:  TFMKLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDI

Query:  QG-VWLEETPASLEEVYRSE
           VWLE+ P  L +V +SE
Subjt:  QG-VWLEETPASLEEVYRSE

A0A2N9I609 Uncharacterized protein2.7e-0733.33Show/hide
Query:  MLTFMKLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMH---FCSVCWCRREVNRVAQMAARQV
        ++T  K  H + DVD  EA+A+ +++ +A++ GL ++EVE DS  +   +  +    +  G ++Q+++Q++  +    F  VC   R  NRVA + AR  
Subjt:  MLTFMKLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMH---FCSVCWCRREVNRVAQMAARQV

Query:  MELDIQG-VWLEETPASLEEVYRSEI
        + L     VWLE+ P  LE+V +SEI
Subjt:  MELDIQG-VWLEETPASLEEVYRSEI

A0A2N9IFR8 RNase H domain-containing protein2.0e-0733.33Show/hide
Query:  TFMKLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDI
        T  K  H +  VD  EA+A+R+++ +A++ GL+ +EVE DS  +   ++ +Q   +  G ++Q+I+Q++  +        RR  NRVA + AR  + L  
Subjt:  TFMKLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDI

Query:  QG-VWLEETPASLEEVYRSE
           VWLE+ P  L +V +SE
Subjt:  QG-VWLEETPASLEEVYRSE

A0A803LHG6 Uncharacterized protein3.1e-0833.03Show/hide
Query:  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPA
        DVD +EAMA+R +L +A E+G +RL +ETD+ ++   ++  + + +  G++V++I  ++   H C   + +RE N+VA   A+     D   VWLEE P+
Subjt:  DVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEETPA

Query:  SLEEVYRSE
         + E+  ++
Subjt:  SLEEVYRSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACCTTTATGAAATTGATCCATCATGTGCAAGATGTGGATGCTCTAGAGGCTATGGCAATCCGTGATAGCTTGTTTGTTGCTAAGGAAGCTGGTCTGCTGAGGTT
GGAGGTGGAAACGGACTCTGCTCGTGTGACGGTCATGGTTCGGTCAAAGCAGAACAATTGTTCTGAGGTAGGAGTCCTGGTGCAAGAGATCAACCAGATCTCGAGGGGGA
TGCATTTCTGCTCTGTGTGTTGGTGCCGGAGGGAGGTGAATCGGGTGGCACAAATGGCGGCGAGGCAAGTGATGGAGCTGGACATTCAGGGTGTGTGGCTGGAGGAGACG
CCGGCGTCTTTGGAGGAGGTGTATCGCAGCGAAATTTTGGACAGTTTTAGTGAAAGCCCGAGGGTTTTGTCCGAGGGCTCCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTACCTTTATGAAATTGATCCATCATGTGCAAGATGTGGATGCTCTAGAGGCTATGGCAATCCGTGATAGCTTGTTTGTTGCTAAGGAAGCTGGTCTGCTGAGGTT
GGAGGTGGAAACGGACTCTGCTCGTGTGACGGTCATGGTTCGGTCAAAGCAGAACAATTGTTCTGAGGTAGGAGTCCTGGTGCAAGAGATCAACCAGATCTCGAGGGGGA
TGCATTTCTGCTCTGTGTGTTGGTGCCGGAGGGAGGTGAATCGGGTGGCACAAATGGCGGCGAGGCAAGTGATGGAGCTGGACATTCAGGGTGTGTGGCTGGAGGAGACG
CCGGCGTCTTTGGAGGAGGTGTATCGCAGCGAAATTTTGGACAGTTTTAGTGAAAGCCCGAGGGTTTTGTCCGAGGGCTCCTTTTAG
Protein sequenceShow/hide protein sequence
MLTFMKLIHHVQDVDALEAMAIRDSLFVAKEAGLLRLEVETDSARVTVMVRSKQNNCSEVGVLVQEINQISRGMHFCSVCWCRREVNRVAQMAARQVMELDIQGVWLEET
PASLEEVYRSEILDSFSESPRVLSEGSF