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Lag0002514 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002514
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:43495026..43495705
RNA-Seq ExpressionLag0002514
SyntenyLag0002514
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU26279.1 hypothetical protein TSUD_224710 [Trifolium subterraneum]5.8e-0934.04Show/hide
Query:  KLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLILG
        K NVDAS+    G  G GW +R+SNG  + AG    +    I   EA AILE ++   S       RR   ++ ESDS  V+ A++ + +  +EL+ I+ 
Subjt:  KLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLILG

Query:  GIECSDEFLKVIRVSKWRREENRLAHNLARAAVEDGSAGFF
         I    +  +   +   +R+ N  AH LARAA+   S  FF
Subjt:  GIECSDEFLKVIRVSKWRREENRLAHNLARAAVEDGSAGFF

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.7e-1336.03Show/hide
Query:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL
        WKLN +A+W  +   GG+GW +RD  G +I A C+ I     I  LE  AI EGL+A         +    P+ +ESDS+E I  L+   +D TE+  +L
Subjt:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL

Query:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVED
          I    + ++++ +    RE N++AH LAR A+E+
Subjt:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVED

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]5.8e-0931.85Show/hide
Query:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL
        WKLN DA+W+ N+GVGGLGW +R+    +  AG + I+    I  LE  AI  G++A  S          + L++ES+S+E I  +    ++ TE+  ++
Subjt:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL

Query:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVE
          I+   E  ++ R    +R+ N +A  +A  A +
Subjt:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.6e-1135.34Show/hide
Query:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL
        W LN DASW ++   GG+GW +R  +G ++ AG + +     +K LEA AILEGL+   ++          PL +E+DS EV   LN   ED T+   ++
Subjt:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL

Query:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAA
          I    +  +++  +K  RE N  AH+LA+ A
Subjt:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.2e-1437.96Show/hide
Query:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKL-PLLVESDSIEVIGALNHDTEDFTELNLI
        WKLN DA+W  +   GG+GW +RD  G +I A C+ I     I  LE  AI EGL+A         ++    P+ +ESDS+E I  L+   +D TE+  +
Subjt:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKL-PLLVESDSIEVIGALNHDTEDFTELNLI

Query:  LGGIECSDEFLKVIRVSKWRREENRLAHNLARAAVED
        L  I    E +K++ +    RE N++AH+LAR A+E+
Subjt:  LGGIECSDEFLKVIRVSKWRREENRLAHNLARAAVED

TrEMBL top hitse value%identityAlignment
A0A2Z6N4A7 RNase H domain-containing protein2.8e-0934.04Show/hide
Query:  KLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLILG
        K NVDAS+    G  G GW +R+SNG  + AG    +    I   EA AILE ++   S       RR   ++ ESDS  V+ A++ + +  +EL+ I+ 
Subjt:  KLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLILG

Query:  GIECSDEFLKVIRVSKWRREENRLAHNLARAAVEDGSAGFF
         I    +  +   +   +R+ N  AH LARAA+   S  FF
Subjt:  GIECSDEFLKVIRVSKWRREENRLAHNLARAAVEDGSAGFF

A0A6J1CP26 uncharacterized protein LOC1110134128.4e-1436.03Show/hide
Query:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL
        WKLN +A+W  +   GG+GW +RD  G +I A C+ I     I  LE  AI EGL+A         +    P+ +ESDS+E I  L+   +D TE+  +L
Subjt:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL

Query:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVED
          I    + ++++ +    RE N++AH LAR A+E+
Subjt:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVED

A0A6J1D5W1 uncharacterized protein LOC1110173292.8e-0931.85Show/hide
Query:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL
        WKLN DA+W+ N+GVGGLGW +R+    +  AG + I+    I  LE  AI  G++A  S          + L++ES+S+E I  +    ++ TE+  ++
Subjt:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL

Query:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVE
          I+   E  ++ R    +R+ N +A  +A  A +
Subjt:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVE

A0A6J1DNV9 uncharacterized protein LOC1110224037.9e-1235.34Show/hide
Query:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL
        W LN DASW ++   GG+GW +R  +G ++ AG + +     +K LEA AILEGL+   ++          PL +E+DS EV   LN   ED T+   ++
Subjt:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL

Query:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAA
          I    +  +++  +K  RE N  AH+LA+ A
Subjt:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAA

A0A6J1DSV1 uncharacterized protein LOC1110236085.8e-1537.96Show/hide
Query:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKL-PLLVESDSIEVIGALNHDTEDFTELNLI
        WKLN DA+W  +   GG+GW +RD  G +I A C+ I     I  LE  AI EGL+A         ++    P+ +ESDS+E I  L+   +D TE+  +
Subjt:  WKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKL-PLLVESDSIEVIGALNHDTEDFTELNLI

Query:  LGGIECSDEFLKVIRVSKWRREENRLAHNLARAAVED
        L  I    E +K++ +    RE N++AH+LAR A+E+
Subjt:  LGGIECSDEFLKVIRVSKWRREENRLAHNLARAAVED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.2e-0525.97Show/hide
Query:  KLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKA-YGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL
        K N DAS +    V GLGW +R+S G++I  G  +       +  E   ++  ++A YG      G ++   ++ E D+  +   +N  + +   L   L
Subjt:  KLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKA-YGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLIL

Query:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVEDG-------SAGFFLVPLV
          I+      + I  S   RE+N  A  LA+ A+++        S  +FL P V
Subjt:  GGIECSDEFLKVIRVSKWRREENRLAHNLARAAVEDG-------SAGFFLVPLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATGAAACGAAGCCCAAGCTGCTGGAAACTGAACGTTGACGCCTCCTGGTACAATAACAAAGGTGTTGGTGGGCTGGGATGGAGCGTTCGTGACTCCAACGGGTC
TCTAATTGGAGCGGGCTGCAAACAAATCAGCAGAAATTGGGCGATCAAGTGTTTAGAAGCGGAAGCGATTCTGGAAGGTCTGAAAGCTTATGGATCTGTCGACGACTTTG
AAGGGAGGAGACGCAAGCTACCACTGCTCGTTGAATCCGATTCCATTGAAGTCATCGGAGCCCTGAACCACGACACCGAAGACTTCACGGAGCTCAACCTAATCCTGGGC
GGAATCGAGTGCAGCGACGAGTTCTTGAAGGTGATAAGAGTCTCAAAATGGCGCAGAGAGGAGAATCGTCTAGCGCACAACCTCGCTCGAGCTGCAGTAGAGGATGGTTC
AGCTGGTTTTTTTTTGGTCCCTCTTGTCTTTCTGTCAAAGAAGATGATGGGTTTTGGAGGGAAGATGTTTTCCCCCTTTGGTTTACCTCGTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTATGAAACGAAGCCCAAGCTGCTGGAAACTGAACGTTGACGCCTCCTGGTACAATAACAAAGGTGTTGGTGGGCTGGGATGGAGCGTTCGTGACTCCAACGGGTC
TCTAATTGGAGCGGGCTGCAAACAAATCAGCAGAAATTGGGCGATCAAGTGTTTAGAAGCGGAAGCGATTCTGGAAGGTCTGAAAGCTTATGGATCTGTCGACGACTTTG
AAGGGAGGAGACGCAAGCTACCACTGCTCGTTGAATCCGATTCCATTGAAGTCATCGGAGCCCTGAACCACGACACCGAAGACTTCACGGAGCTCAACCTAATCCTGGGC
GGAATCGAGTGCAGCGACGAGTTCTTGAAGGTGATAAGAGTCTCAAAATGGCGCAGAGAGGAGAATCGTCTAGCGCACAACCTCGCTCGAGCTGCAGTAGAGGATGGTTC
AGCTGGTTTTTTTTTGGTCCCTCTTGTCTTTCTGTCAAAGAAGATGATGGGTTTTGGAGGGAAGATGTTTTCCCCCTTTGGTTTACCTCGTCTTTGA
Protein sequenceShow/hide protein sequence
MIMKRSPSCWKLNVDASWYNNKGVGGLGWSVRDSNGSLIGAGCKQISRNWAIKCLEAEAILEGLKAYGSVDDFEGRRRKLPLLVESDSIEVIGALNHDTEDFTELNLILG
GIECSDEFLKVIRVSKWRREENRLAHNLARAAVEDGSAGFFLVPLVFLSKKMMGFGGKMFSPFGLPRL