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Lag0002525 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002525
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:43600775..43601278
RNA-Seq ExpressionLag0002525
SyntenyLag0002525
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4367202.1 hypothetical protein F8388_006510 [Cannabis sativa]2.8e-0537.04Show/hide
Query:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL
        + W + +N +P K NL+ RG+ INP+C+ C +  E  +HA+W  +KV+ +W ++
Subjt:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL

KAF4385133.1 hypothetical protein F8388_014266 [Cannabis sativa]4.8e-0537.04Show/hide
Query:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL
        + W + +N +P K NL+ RG+ INP+C+ C +  E  +HA+W  +KV+ +W ++
Subjt:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL

KAF4391669.1 hypothetical protein F8388_005434 [Cannabis sativa]2.8e-0537.04Show/hide
Query:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL
        + W + +N +P K NL+ RG+ INP+C+ C K  +  +HA+W  +KV+ +W ++
Subjt:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL

KAF4391976.1 hypothetical protein F8388_004305 [Cannabis sativa]4.8e-0537.04Show/hide
Query:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL
        + W + +N +P K NL+ RG+ INP+C+ C +  E  +HA+W  +KV+ +W ++
Subjt:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]1.9e-0644.44Show/hide
Query:  WNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNILFP
        W +  + +P+ RNLI RG+D NP C VC K+ E + HA+++ K+ + +WNIL P
Subjt:  WNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNILFP

TrEMBL top hitse value%identityAlignment
A0A2N9HW04 Reverse transcriptase domain-containing protein1.3e-0526.67Show/hide
Query:  MDAKDILNIPIGNPLLEMKSYGLWIP--KEFLRLKVHIILLRKSNKQRQHLPQGRRNTRFG---KDYGGSTFYP------WNIVKNIIPTKRNLISRGLD
        ++A+ IL +P+G+P  +   Y  + P  K  +R   H+++    N  +   P    N   G   +D       P      W   +  +PTK+NL  R + 
Subjt:  MDAKDILNIPIGNPLLEMKSYGLWIP--KEFLRLKVHIILLRKSNKQRQHLPQGRRNTRFG---KDYGGSTFYP------WNIVKNIIPTKRNLISRGLD

Query:  INPMCSVCRKKREDSAHAIWESKKVRAMWNIL--FPNLMEDPFLFQGWNLYGALVGVDDEQHFLF
        ++P C  C    ED+ H++W  + V  +W  +  F +L   PF   G  LY  L  +D+    LF
Subjt:  INPMCSVCRKKREDSAHAIWESKKVRAMWNIL--FPNLMEDPFLFQGWNLYGALVGVDDEQHFLF

A0A6J1CTE3 uncharacterized protein LOC1110145789.3e-0744.44Show/hide
Query:  WNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNILFP
        W +  + +P+ RNLI RG+D NP C VC K+ E + HA+++ K+ + +WNIL P
Subjt:  WNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNILFP

A0A7J6F936 CCHC-type domain-containing protein1.3e-0537.04Show/hide
Query:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL
        + W + +N +P K NL+ RG+ INP+C+ C +  E  +HA+W  +KV+ +W ++
Subjt:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL

A0A7J6HB13 CCHC-type domain-containing protein1.3e-0537.04Show/hide
Query:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL
        + W + +N +P K NL+ RG+ INP+C+ C K  +  +HA+W  +KV+ +W ++
Subjt:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL

A0A803QEE2 Uncharacterized protein1.0e-0535.19Show/hide
Query:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL
        + W +  N +P K NL+ RG+++NP C  C    E   HA+W+  K +A+W ++
Subjt:  YPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G10613.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.5e-0432.2Show/hide
Query:  IPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNILFPNLMEDPFLFQGW
        +PT+  L+S GL I+P+C +C +  E   H I       ++WN++   L   P  F+ W
Subjt:  IPTKRNLISRGLDINPMCSVCRKKREDSAHAIWESKKVRAMWNILFPNLMEDPFLFQGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCGAAAGATATTCTAAATATTCCCATTGGCAACCCCCTGCTCGAGATGAAATCATATGGGCTATGGATTCCAAAGGAGTTTTTAAGGTTAAAAGTGCATATCAT
CTTGCTTCGAAAATCCAACAAGCAAAGGCAGCATCTTCCTCAAGGGCGGAGGAACACACGATTTGGGAAAGACTACGGGGGCTCAACATTTTACCCTTGGAATATTGTTA
AAAACATAATCCCTACCAAAAGGAATCTAATCTCAAGAGGATTAGACATTAACCCGATGTGCTCTGTGTGTAGGAAAAAAAGGGAAGATTCGGCGCATGCTATTTGGGAG
AGCAAGAAGGTAAGAGCTATGTGGAATATATTATTTCCTAATCTAATGGAGGATCCTTTTCTGTTTCAGGGGTGGAACCTCTATGGAGCTTTGGTGGGAGTGGATGATGA
GCAGCATTTCCTATTTCCAGATCTTTTTCACTCCCACCAAAGCTCCATAGAGGTTCCATCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCGAAAGATATTCTAAATATTCCCATTGGCAACCCCCTGCTCGAGATGAAATCATATGGGCTATGGATTCCAAAGGAGTTTTTAAGGTTAAAAGTGCATATCAT
CTTGCTTCGAAAATCCAACAAGCAAAGGCAGCATCTTCCTCAAGGGCGGAGGAACACACGATTTGGGAAAGACTACGGGGGCTCAACATTTTACCCTTGGAATATTGTTA
AAAACATAATCCCTACCAAAAGGAATCTAATCTCAAGAGGATTAGACATTAACCCGATGTGCTCTGTGTGTAGGAAAAAAAGGGAAGATTCGGCGCATGCTATTTGGGAG
AGCAAGAAGGTAAGAGCTATGTGGAATATATTATTTCCTAATCTAATGGAGGATCCTTTTCTGTTTCAGGGGTGGAACCTCTATGGAGCTTTGGTGGGAGTGGATGATGA
GCAGCATTTCCTATTTCCAGATCTTTTTCACTCCCACCAAAGCTCCATAGAGGTTCCATCCTAA
Protein sequenceShow/hide protein sequence
MDAKDILNIPIGNPLLEMKSYGLWIPKEFLRLKVHIILLRKSNKQRQHLPQGRRNTRFGKDYGGSTFYPWNIVKNIIPTKRNLISRGLDINPMCSVCRKKREDSAHAIWE
SKKVRAMWNILFPNLMEDPFLFQGWNLYGALVGVDDEQHFLFPDLFHSHQSSIEVPS