; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0002572 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002572
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionExopolygalacturonase-like
Genome locationchr4:43906960..43907674
RNA-Seq ExpressionLag0002572
SyntenyLag0002572
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048661.1 exopolygalacturonase-like [Cucumis melo var. makuwa]3.9e-3383.91Show/hide
Query:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV
        QTYGTKK K S WKISDVHFKNIRGTS TNVAVLLECS L PC+GVELRDINLTYGG NLRNTTIVSSC NA+I   GVQN PPCVV
Subjt:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV

KAG6575808.1 Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]3.9e-3362.6Show/hide
Query:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY
        + C+    + G R KT  G  T       FD     K        QTYGTKKNKASKWKISDVHFKNIRGTS TNVAVLLECS LFPC+GVELRDINL+Y
Subjt:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY

Query:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV
        GG +LRNTT VSSCLNA+I+  G QN P CV
Subjt:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV

XP_022953711.1 exopolygalacturonase clone GBGE184-like [Cucurbita moschata]3.9e-3362.6Show/hide
Query:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY
        + C+    + G R KT  G  T       FD     K        QTYGTKKNKASKWKISDVHFKNIRGTS TNVAVLLECS LFPC+GVELRDINL+Y
Subjt:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY

Query:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV
        GG +LRNTT VSSCLNA+I+  G QN P CV
Subjt:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV

XP_022991230.1 exopolygalacturonase clone GBGE184-like [Cucurbita maxima]1.8e-3361.83Show/hide
Query:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY
        + C+    + G R KT  GT +       FD     K        QTYGTKKNKASKWKISDVHFKNIRGTS TNVAV+LECS LFPC+GVELRDINL+Y
Subjt:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY

Query:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV
        GG +L+NTT VSSCLNA+I+  GVQN P CV
Subjt:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV

XP_023548983.1 exopolygalacturonase clone GBGE184-like [Cucurbita pepo subsp. pepo]1.8e-3362.12Show/hide
Query:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY
        + C+    + G R KT  G  T       FD     K        QTYGTKKNKASKWKISD+HFKNIRGTS TNVAVLLECS LFPC+GVELRDINL+Y
Subjt:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY

Query:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV
        GG +LRNTT VSSCLNA+I   GVQN P C V
Subjt:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV

TrEMBL top hitse value%identityAlignment
A0A5A7TQ89 Exopolygalacturonase-like1.9e-3383.91Show/hide
Query:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV
        QTYGTKK K S WKISDVHFKNIRGTS TNVAVLLECS L PC+GVELRDINLTYGG NLRNTTIVSSC NA+I   GVQN PPCVV
Subjt:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV

A0A5A7U0D6 Exopolygalacturonase-like2.5e-3383.91Show/hide
Query:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV
        QTYGTKK K S WKISDVHFKNIRGTS TNVAVLLECS L PC+GVELRDINLTYGG NLRNTTIVSSC NA+I   GVQN PPCVV
Subjt:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV

A0A5A7U4W1 Exopolygalacturonase-like1.9e-3383.91Show/hide
Query:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV
        QTYGTKK K S WKISDVHFKNIRGTS TNVAVLLECS L PC+GVELRDINLTYGG NLRNTTIVSSC NA+I   GVQN PPCVV
Subjt:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV

A0A6J1GNU8 exopolygalacturonase clone GBGE184-like1.9e-3362.6Show/hide
Query:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY
        + C+    + G R KT  G  T       FD     K        QTYGTKKNKASKWKISDVHFKNIRGTS TNVAVLLECS LFPC+GVELRDINL+Y
Subjt:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY

Query:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV
        GG +LRNTT VSSCLNA+I+  G QN P CV
Subjt:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV

A0A6J1JSB0 exopolygalacturonase clone GBGE184-like8.5e-3461.83Show/hide
Query:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY
        + C+    + G R KT  GT +       FD     K        QTYGTKKNKASKWKISDVHFKNIRGTS TNVAV+LECS LFPC+GVELRDINL+Y
Subjt:  ERCSGSGQSKGARKKTPKGTHT-----FDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY

Query:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV
        GG +L+NTT VSSCLNA+I+  GVQN P CV
Subjt:  GGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)1.2e-0861.7Show/hide
Query:  SKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGG
        S  K+S + FKNI+GTS T  AV L CS  FPC GVEL DI+LTY G
Subjt:  SKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGG

P26216 Exopolygalacturonase3.5e-0843.59Show/hide
Query:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPC
        N ASK  + DV FKNI GTS T  AV L C+A  PC GV + D+N+ Y G N +   I   C NA+    G      C
Subjt:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPC

P35339 Exopolygalacturonase4.5e-0842.31Show/hide
Query:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPC
        N ASK  + DV FKNI GTS T  AV L C+A  PC GV + D+N+ Y G N +   +   C NA+    G      C
Subjt:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPC

Q39766 Polygalacturonase3.1e-0934.85Show/hide
Query:  CSGSGQSKGARKKTPKGTH---TFDFDFTSFSKN------LKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINL
        C+ +  S GAR KT  G H     +  F   + N      L    +      KKN+ SK K+S++ FKNIRGTS    A+   CS   PC+ VEL DI++
Subjt:  CSGSGQSKGARKKTPKGTH---TFDFDFTSFSKN------LKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINL

Query:  TYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPC
         + G         S CLN +    G  N  PC
Subjt:  TYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPC

Q39786 Polygalacturonase1.8e-0934.85Show/hide
Query:  CSGSGQSKGARKKTPKGTH---TFDFDFTSFSKN------LKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINL
        C+ +  S GAR KT  G H     +  F   + N      L    +      KKN+ SK K+S++ FKNIRGTS    A+   CS   PC+ VEL DI++
Subjt:  CSGSGQSKGARKKTPKGTH---TFDFDFTSFSKN------LKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINL

Query:  TYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPC
         + G         S CLN +    G  N  PC
Subjt:  TYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPC

Arabidopsis top hitse value%identityAlignment
AT1G02790.1 polygalacturonase 41.6e-0837.36Show/hide
Query:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY----GGDNLRNT--TIVSSCLNAQIEHHGVQNSPPC
        Q YG++    S+  ISD+ FKNIRGT++T   V + CS   PC+GV + D+NL Y    GG+   ++   + + C NA +   G  + P C
Subjt:  QTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTY----GGDNLRNT--TIVSSCLNAQIEHHGVQNSPPC

AT1G05650.1 Pectin lyase-like superfamily protein1.2e-0842.47Show/hide
Query:  KISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV
        KI+ V +KNI+GTS T  A+ L CS   PC G+ L+DI LTY     + T   S C NA  ++ GV     C+
Subjt:  KISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV

AT1G05660.1 Pectin lyase-like superfamily protein4.2e-0943.04Show/hide
Query:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV
        N+ S  KIS V +KNI+GTS T  A+ L CS   PC G+ L+DI LTY     + T   S C NA  +  GV     C+
Subjt:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV

AT3G59850.1 Pectin lyase-like superfamily protein2.5e-0940.51Show/hide
Query:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV
        N+ S  KISDV F +I GTS T V V L+CS+  PC G+ ++D+ LTY     RN    + C +A     G Q    C+
Subjt:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCV

AT4G18180.1 Pectin lyase-like superfamily protein7.7e-1143.02Show/hide
Query:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINL----TYGG----DNLRNTTIVSSCLNAQIEHHGVQNSPPC
        N  SK ++S+++FKNIRGTS + VAV L CS   PCK V L +++L    + GG     N  N  + SSC N +  + G Q  PPC
Subjt:  NKASKWKISDVHFKNIRGTSVTNVAVLLECSALFPCKGVELRDINL----TYGG----DNLRNTTIVSSCLNAQIEHHGVQNSPPC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCGATTCGACGTTCATGTGTGATCCAGTGGGTTTCGATTCTCCGTTCGTTCTCGCCATTTGGAACCTCCTTTCGGCGAGGTCGATTCGAGAGCGATGTTCGGG
TTCAGGGCAATCGAAAGGCGCGAGGAAGAAAACGCCGAAGGGAACCCACACATTTGATTTCGATTTTACGAGTTTCTCAAAAAATCTGAAGTCATGGGCGTTCTCTCAAA
CTTATGGTACAAAGAAGAACAAGGCTTCGAAGTGGAAGATCAGCGACGTTCACTTCAAGAACATCCGTGGAACGTCGGTGACAAACGTGGCGGTGTTGTTGGAGTGCAGC
GCGTTGTTTCCATGTAAGGGGGTGGAGCTGAGGGACATTAACTTGACCTATGGGGGCGACAACTTGAGGAATACGACCATTGTTTCTTCATGTTTGAATGCACAAATTGA
ACATCATGGGGTGCAGAACTCACCGCCTTGTGTTGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCCGATTCGACGTTCATGTGTGATCCAGTGGGTTTCGATTCTCCGTTCGTTCTCGCCATTTGGAACCTCCTTTCGGCGAGGTCGATTCGAGAGCGATGTTCGGG
TTCAGGGCAATCGAAAGGCGCGAGGAAGAAAACGCCGAAGGGAACCCACACATTTGATTTCGATTTTACGAGTTTCTCAAAAAATCTGAAGTCATGGGCGTTCTCTCAAA
CTTATGGTACAAAGAAGAACAAGGCTTCGAAGTGGAAGATCAGCGACGTTCACTTCAAGAACATCCGTGGAACGTCGGTGACAAACGTGGCGGTGTTGTTGGAGTGCAGC
GCGTTGTTTCCATGTAAGGGGGTGGAGCTGAGGGACATTAACTTGACCTATGGGGGCGACAACTTGAGGAATACGACCATTGTTTCTTCATGTTTGAATGCACAAATTGA
ACATCATGGGGTGCAGAACTCACCGCCTTGTGTTGTATAA
Protein sequenceShow/hide protein sequence
MSSDSTFMCDPVGFDSPFVLAIWNLLSARSIRERCSGSGQSKGARKKTPKGTHTFDFDFTSFSKNLKSWAFSQTYGTKKNKASKWKISDVHFKNIRGTSVTNVAVLLECS
ALFPCKGVELRDINLTYGGDNLRNTTIVSSCLNAQIEHHGVQNSPPCVV