CuGenDBv2

Gene ID	Lag0002629
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transcription initiation factor TFIID subunit 13
Genome location	chr4:44369076..44371877
RNA-Seq Expression	Lag0002629
Synteny	Lag0002629
Gene Ontology terms	GO:0006366 - transcription by RNA polymerase II (biological process) GO:0006413 - translational initiation (biological process) GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0009960 - endosperm development (biological process) GO:0005634 - nucleus (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domains	IPR003195 - Transcription initiation factor IID, subunit 13 IPR009072 - Histone-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK18217.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]

1.4e-65

90.32

Show/hide

Query:  VSSGEFPAVTRTLRLRKIVKMNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGK
        +SS  FP          IVKMNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGK
Subjt:  VSSGEFPAVTRTLRLRKIVKMNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGK

Query:  LSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        LSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  LSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

XP_008451497.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo]

1.0e-63

98.52

Show/hide

Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]

9.3e-65

99.26

Show/hide

Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

XP_022991537.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima]

3.0e-63

97.06

Show/hide

Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]

1.2e-64

98.53

Show/hide

Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BRL0 transcription initiation factor TFIID subunit 13

5.0e-64

98.52

Show/hide

Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A5A7TZC2 Transcription initiation factor TFIID subunit 13

5.0e-64

98.52

Show/hide

Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A5D3D2Q2 Transcription initiation factor TFIID subunit 13

7.0e-66

90.32

Show/hide

Query:  VSSGEFPAVTRTLRLRKIVKMNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGK
        +SS  FP          IVKMNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGK
Subjt:  VSSGEFPAVTRTLRLRKIVKMNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGK

Query:  LSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD
        LSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK+D
Subjt:  LSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLD

A0A6J1CTQ0 transcription initiation factor TFIID subunit 13

4.5e-65

99.26

Show/hide

Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

A0A6J1JWI2 transcription initiation factor TFIID subunit 13

1.5e-63

97.06

Show/hide

Query:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
        MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDD NPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE++K+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEEDKLDQ

SwissProt top hits

e value

%identity

Alignment

P61216 Transcription initiation factor TFIID subunit 13

6.3e-24

59.57

Show/hide

Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q148M7 Transcription initiation factor TFIID subunit 13

6.3e-24

59.57

Show/hide

Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q15543 Transcription initiation factor TFIID subunit 13

6.3e-24

59.57

Show/hide

Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q5R9W6 Transcription initiation factor TFIID subunit 13

6.3e-24

59.57

Show/hide

Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q6NQH4 Transcription initiation factor TFIID subunit 13

3.8e-37

65.08

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Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL

Arabidopsis top hits

e value

%identity

Alignment

AT1G02680.1 TBP-associated factor 13

2.7e-38

65.08

Show/hide

Query:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN
        N P+A +SS  ++   G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVEY+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLN
Subjt:  NNPSAGSSSKQRT---GSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLN

Query:  RSTELLSMNEELKQARRAFEIDEDKL
        R  ELL+M EELKQAR+AF++DE +L
Subjt:  RSTELLSMNEELKQARRAFEIDEDKL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCGACATGTCGCCGACATTTCCATGGAAATGTCGACATGTCGTCGACATGGGGGAAGATCGAAACTTCCCCCCACGGAAATGTCGACACTGTCGACATACCGACATT
TCCATGGAAATGTCGAGGCCGAAATTTTGACAAATTAATAAATCTTACCCTCGTCGTTCCTCCTGATCGGACCCTTCTGCAGAAGAGTACTGTTAGCTCCGGCGAATTTC
CTGCGGTGACTCGAACTCTCCGTCTCCGAAAGATCGTGAAGATGAACAATCCATCTGCCGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCCCAGCCCTCTGAAACTTCT
TTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCCAATCCCCTTCCAGAGTCTGTAGCACTTATGGAGGACATAGT
TGTGGAGTACATCACTGAACTTGTGTATAAAGCCCAGGAAATTGGATCAAAAAGGGGGAAACTATCTGTGGAAGACTTTTTGTATTTAATGCGCAAGGACCCACGCAAAC
TTAACCGTTCGACCGAACTGCTGTCAATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAAGAGGACAAG
TTGGATCAGTAG

mRNA sequence

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Protein sequence

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MSTCRRHFHGNVDMSSTWGKIETSPHGNVDTVDIPTFPWKCRGRNFDKLINLTLVVPPDRTLLQKSTVSSGEFPAVTRTLRLRKIVKMNNPSAGSSSKQRTGSSQPSETS
FKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDK
LDQ

Lag0002629 (gene) of Sponge gourd (AG-4) v1 genome