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Lag0002648 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002648
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionF-box/LRR-repeat protein
Genome locationchr4:44514085..44514849
RNA-Seq ExpressionLag0002648
SyntenyLag0002648
Gene Ontology termsNA
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039267.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa]4.5e-1652.04Show/hide
Query:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE
        V++L I+  NI  ++W  C   C  L  LK+ CGFVDDWG L LPSL  LEI+   S   E A++ G  MF GCPNLESLVL +Y  E+  ISAP+LE
Subjt:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE

XP_008459617.1 PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo]5.9e-1651.02Show/hide
Query:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE
        V++L ++  NI  ++W  C   C  L  LK+ CGFVDDWG L LPSL  LEI+   S   E A++ G  MF GCPNLESLVL +Y  E+  ISAP+LE
Subjt:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE

XP_008459618.1 PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo]5.9e-1651.02Show/hide
Query:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE
        V++L ++  NI  ++W  C   C  L  LK+ CGFVDDWG L LPSL  LEI+   S   E A++ G  MF GCPNLESLVL +Y  E+  ISAP+LE
Subjt:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE

XP_022141765.1 LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820, partial [Momordica charantia]1.7e-1552.58Show/hide
Query:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWD-YESADFGGNMFEGCPNLESLVLENYPCENFCISAPKLE
        V+EL I      Y++W C LS C  L VLK+ CGFVDD G+LK  SL  LEI+    D Y+       MF GCPNLESLVL NY  ++  ISAPKLE
Subjt:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWD-YESADFGGNMFEGCPNLESLVLENYPCENFCISAPKLE

XP_022141791.1 LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica charantia]3.9e-2052.68Show/hide
Query:  CFDQKHPTGVATIFRVRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWDYESADFGG-NMFEGCPNLESLVLENYP
        CF ++H         VREL +D   IS +DW  CLS C  LTVLK+ CGFV DWG L LPSL  LEI+    + + AD+ G  MF GCPNL+SLVL NY 
Subjt:  CFDQKHPTGVATIFRVRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWDYESADFGG-NMFEGCPNLESLVLENYP

Query:  CENFCISAPKLE
         E+  I APKLE
Subjt:  CENFCISAPKLE

TrEMBL top hitse value%identityAlignment
A0A1S3CB41 F-box/LRR-repeat protein At3g26922-like isoform X12.8e-1651.02Show/hide
Query:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE
        V++L ++  NI  ++W  C   C  L  LK+ CGFVDDWG L LPSL  LEI+   S   E A++ G  MF GCPNLESLVL +Y  E+  ISAP+LE
Subjt:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE

A0A1S3CBU6 F-box/LRR-repeat protein At3g26922-like isoform X22.8e-1651.02Show/hide
Query:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE
        V++L ++  NI  ++W  C   C  L  LK+ CGFVDDWG L LPSL  LEI+   S   E A++ G  MF GCPNLESLVL +Y  E+  ISAP+LE
Subjt:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE

A0A5A7TCF1 F-box/LRR-repeat protein2.2e-1652.04Show/hide
Query:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE
        V++L I+  NI  ++W  C   C  L  LK+ CGFVDDWG L LPSL  LEI+   S   E A++ G  MF GCPNLESLVL +Y  E+  ISAP+LE
Subjt:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSS-SWDYESADFGG-NMFEGCPNLESLVLENYPCENFCISAPKLE

A0A6J1CJ18 LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g568208.3e-1652.58Show/hide
Query:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWD-YESADFGGNMFEGCPNLESLVLENYPCENFCISAPKLE
        V+EL I      Y++W C LS C  L VLK+ CGFVDD G+LK  SL  LEI+    D Y+       MF GCPNLESLVL NY  ++  ISAPKLE
Subjt:  VRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWD-YESADFGGNMFEGCPNLESLVLENYPCENFCISAPKLE

A0A6J1CKA9 LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like1.9e-2052.68Show/hide
Query:  CFDQKHPTGVATIFRVRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWDYESADFGG-NMFEGCPNLESLVLENYP
        CF ++H         VREL +D   IS +DW  CLS C  LTVLK+ CGFV DWG L LPSL  LEI+    + + AD+ G  MF GCPNL+SLVL NY 
Subjt:  CFDQKHPTGVATIFRVRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWDYESADFGG-NMFEGCPNLESLVLENYP

Query:  CENFCISAPKLE
         E+  I APKLE
Subjt:  CENFCISAPKLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13780.1 F-box/RNI-like/FBD-like domains-containing protein7.2e-0428.74Show/hide
Query:  IDIQNISYF-------DWHCC------LSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWDYESADFGGNMFEGCPNLESLV
        +D+++ +Y+       D+ C       L  CK L  LKLS   ++D G + LP L  + ++   WD         +  GCP LE L+
Subjt:  IDIQNISYF-------DWHCC------LSKCKWLTVLKLSCGFVDDWGSLKLPSLTTLEIKSSSWDYESADFGGNMFEGCPNLESLV

AT3G26922.1 F-box/RNI-like superfamily protein1.3e-0531.48Show/hide
Query:  GVATIFRVRELRIDIQNI-SYFDWHCCLSKCKWLTVLKL-SCGFVDDWGSLKLPSLTTLEIKSSSWDYESADFGGNMFEGCPNLESLVLEN---YPCENF
        G+A    VR+L + ++++   F +   L  C+ L  L L S   VD      L SL TL +++  + Y+ + +  N+  GCPNLE+LV+        E F
Subjt:  GVATIFRVRELRIDIQNI-SYFDWHCCLSKCKWLTVLKL-SCGFVDDWGSLKLPSLTTLEIKSSSWDYESADFGGNMFEGCPNLESLVLEN---YPCENF

Query:  CISAPKLE
         I+ P L+
Subjt:  CISAPKLE

AT4G13965.1 Protein with RNI-like/FBD-like domains8.5e-0531.52Show/hide
Query:  GVATIFRVRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDW-GSLKLPSLTTLEIKSSSWDYESADFGGNMFEGCPNLESLVLENYP
        G+A    +R+L +++     F     L  C+ L  L+L    + D   S+ L SL TL +     D++  +   N+  GCPNLE+LV+  YP
Subjt:  GVATIFRVRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDW-GSLKLPSLTTLEIKSSSWDYESADFGGNMFEGCPNLESLVLENYP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGATCTTCACCGGCGGCGACTGGACGGCGACCAAAAGCATCCGACTCGTGTGTGTTTCGACCGAAGGCGTCTGGACAACGACTGGACGGGTTTCACCTTCTTTCC
CGCATTTCGACCGAAGGGGCGTCTGGACGGCTACCGAAGGTGTTTCGACCAAAAGCATCCGACTGGAGTTGCTACTATTTTCAGGGTTCGAGAGCTTCGCATTGATATCC
AAAACATCTCTTACTTTGACTGGCACTGTTGTTTATCAAAGTGTAAATGGCTCACCGTGCTAAAGTTGTCGTGTGGGTTTGTGGATGACTGGGGATCCTTGAAGCTACCA
TCTTTAACAACATTGGAGATTAAAAGTAGTTCATGGGATTATGAATCTGCAGATTTTGGAGGAAACATGTTTGAAGGGTGTCCAAATTTGGAATCTTTGGTTCTAGAAAA
TTACCCTTGTGAGAATTTTTGTATTTCTGCTCCAAAGCTTGAAATTTGGAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGATCTTCACCGGCGGCGACTGGACGGCGACCAAAAGCATCCGACTCGTGTGTGTTTCGACCGAAGGCGTCTGGACAACGACTGGACGGGTTTCACCTTCTTTCC
CGCATTTCGACCGAAGGGGCGTCTGGACGGCTACCGAAGGTGTTTCGACCAAAAGCATCCGACTGGAGTTGCTACTATTTTCAGGGTTCGAGAGCTTCGCATTGATATCC
AAAACATCTCTTACTTTGACTGGCACTGTTGTTTATCAAAGTGTAAATGGCTCACCGTGCTAAAGTTGTCGTGTGGGTTTGTGGATGACTGGGGATCCTTGAAGCTACCA
TCTTTAACAACATTGGAGATTAAAAGTAGTTCATGGGATTATGAATCTGCAGATTTTGGAGGAAACATGTTTGAAGGGTGTCCAAATTTGGAATCTTTGGTTCTAGAAAA
TTACCCTTGTGAGAATTTTTGTATTTCTGCTCCAAAGCTTGAAATTTGGAGTTAG
Protein sequenceShow/hide protein sequence
MQDLHRRRLDGDQKHPTRVCFDRRRLDNDWTGFTFFPAFRPKGRLDGYRRCFDQKHPTGVATIFRVRELRIDIQNISYFDWHCCLSKCKWLTVLKLSCGFVDDWGSLKLP
SLTTLEIKSSSWDYESADFGGNMFEGCPNLESLVLENYPCENFCISAPKLEIWS