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Lag0002659 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002659
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr4:44601391..44602020
RNA-Seq ExpressionLag0002659
SyntenyLag0002659
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]4.7e-5064.48Show/hide
Query:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG
        TS TK  I+KDE  +++PVLRYVPLSR KKG ESPF E  + +KV DIEI+KESFTTPLTKI KQEV+    D ++  L +RR KDGFDPK YKL+AKAG
Subjt:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG

Query:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE
        YDFT HTEFK L I D RPELSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV   NHIT+EE DD+ + +   N+
Subjt:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]4.7e-5064.48Show/hide
Query:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG
        TS TK  I+KDE  +++PVLRYVPLSR KKG ESPF E  + +KV DIEI+KESFTTPLTKI KQEV+    D ++  L +RR KDGFDPK YKL+AKAG
Subjt:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG

Query:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE
        YDFT HTEFK L I D RPELSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV   NHIT+EE DD+ + +   N+
Subjt:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]4.7e-5064.48Show/hide
Query:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG
        TS TK  I+KDE  +++PVLRYVPLSR KKG ESPF E  + +KV DIEI+KESFTTPLTKI KQEV+    D ++  L +RR KDGFDPK YKL+AKAG
Subjt:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG

Query:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE
        YDFT HTEFK L I D RPELSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV   NHIT+EE DD+ + +   N+
Subjt:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]4.7e-5064.48Show/hide
Query:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG
        TS TK  I+KDE  +++PVLRYVPLSR KKG ESPF E  + +KV DIEI+KESFTTPLTKI KQEV+    D ++  L +RR KDGFDPK YKL+AKAG
Subjt:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG

Query:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE
        YDFT HTEFK L I D RPELSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV   NHIT+EE DD+ + +   N+
Subjt:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]4.7e-5064.48Show/hide
Query:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG
        TS TK  I+KDE  +++PVLRYVPLSR KKG ESPF E  + +KV DIEI+KESFTTPLTKI KQEV+    D ++  L +RR KDGFDPK YKL+AKAG
Subjt:  TSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKAG

Query:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE
        YDFT HTEFK L I D RPELSSTQKKLL EG+++P SRKGL YKS EP+ ITK GK KV   NHIT+EE DD+ + +   N+
Subjt:  YDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNE

TrEMBL top hitse value%identityAlignment
A0A5A7TH79 Gypsy-like retrotransposase1.1e-4962.09Show/hide
Query:  STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKA
        STS TK  I+ DEK S+ P+LRYVPLSR KKG ESPF E  + +KV DIE+LKESFTTPLTKITKQ ++    D ++ +L +RR KDGFDPK YKL+AKA
Subjt:  STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKA

Query:  GYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSST
        GYDFTTHTE K L+I + +P+LSSTQKKLL EG+ +P SRKGL YK  EP+HITK GK KV   N+ITV+E D  +E++  +
Subjt:  GYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSST

A0A5A7TJZ7 Retrotransposon gag protein1.2e-4861.45Show/hide
Query:  STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKA
        STS  K  I+ DEK S+ P+LRYVPLSRCKKG ESPF +  + +KV DIE+LKESFTTP TKITKQE++    D  + +L +   KDGFDPK YKL+AK 
Subjt:  STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKA

Query:  GYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQ
        GYDFTTH EFK L+I + +P+LSSTQKKLL EG+ +P SRKGL YKS EP+ IT+ GK KV   NHITV+E D  KE++
Subjt:  GYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQ

A0A5A7UD46 Uncharacterized protein2.3e-5061.54Show/hide
Query:  STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKA
        ST+  K  I+ DEK S+ P+LRYVPLSR KKG ESPF E  + +KV +IE+LKESFTTPLTKITKQE++    D  + +L +RR KDGFDPK YKL+AKA
Subjt:  STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKA

Query:  GYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSST
        GYDFTTHTEFK L+I++ +P+LSSTQKKLL EG+ +P SRKGL YKS EP+ IT+ GK KV  +NHIT++EAD  +E++  +
Subjt:  GYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSST

A0A5A7UEC9 Uncharacterized protein5.0e-5061.2Show/hide
Query:  ISTSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAK
        +STS  K  I+ DEK S+ P+LRYVPLSR KKG ESPF E  + +KV DIE+LKESFTTPLTKI K+E++    D  + +L +RR KDGFDPK YKL+AK
Subjt:  ISTSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAK

Query:  AGYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSST
        AGYDF THTEFKIL+I + +P+LSSTQKKLL EG+ +P SRKGL YKS EP+ IT+ GK KV  +NHITV+E D  +E++  +
Subjt:  AGYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSST

A0A5D3BY54 Ty3-gypsy retrotransposon protein8.6e-5062.09Show/hide
Query:  STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKA
        STS  K  IV DEK S+ P+LRYVPLSR KKG ESPF E  + +KV DIE+LKESFTTPLTKITKQE++    D ++ +L +RR KDGFDPK YK +AKA
Subjt:  STSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAKA

Query:  GYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSST
        GYDFTTHTEFK L+I + +P+LSSTQKKLL EG+ +P SRKGL YK  EP+ IT+ GK KV  +NHITV+E D  +E++  +
Subjt:  GYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGCATCTGGGATTTTCGAAGAGACAATCTCTACGAGCCCCACGAAACCTAAGATTGTAAAGGATGAGAAATTTTCAAGTTCACCTGTCCTACGGTACGTCCCTTT
ATCTCGATGTAAAAAAGGTGAAGAATCACCTTTCACAGAATGTTCGGAAAACATAAAGGTTTGTGACATTGAAATTTTGAAAGAAAGTTTCACTACGCCTCTTACAAAGA
TCACAAAGCAAGAGGTAAGGAGACCTGAGAATGACCAAATGAAGATGGCTTTGCTTGAGAGGCGGATGAAAGATGGGTTTGACCCTAAGACATACAAACTTCTAGCGAAA
GCGGGTTATGACTTCACAACTCATACTGAGTTTAAAATTCTAAGGATCTTTGATGGAAGACCTGAGCTTTCTTCGACACAAAAGAAGCTTCTAATGGAAGGTTATACTCT
TCCTACATCGAGAAAAGGCCTTAGATATAAATCACTTGAGCCAGTTCACATAACAAAAATAGGGAAATTGAAAGTGACATACACAAATCATATAACGGTAGAGGAAGCTG
ACGACTCGAAAGAAGAACAAAGTTCGACCAACGAACTTCTGTTTTTAGGCACATCAGAGCGTCGGTTGCTCATGCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGCATCTGGGATTTTCGAAGAGACAATCTCTACGAGCCCCACGAAACCTAAGATTGTAAAGGATGAGAAATTTTCAAGTTCACCTGTCCTACGGTACGTCCCTTT
ATCTCGATGTAAAAAAGGTGAAGAATCACCTTTCACAGAATGTTCGGAAAACATAAAGGTTTGTGACATTGAAATTTTGAAAGAAAGTTTCACTACGCCTCTTACAAAGA
TCACAAAGCAAGAGGTAAGGAGACCTGAGAATGACCAAATGAAGATGGCTTTGCTTGAGAGGCGGATGAAAGATGGGTTTGACCCTAAGACATACAAACTTCTAGCGAAA
GCGGGTTATGACTTCACAACTCATACTGAGTTTAAAATTCTAAGGATCTTTGATGGAAGACCTGAGCTTTCTTCGACACAAAAGAAGCTTCTAATGGAAGGTTATACTCT
TCCTACATCGAGAAAAGGCCTTAGATATAAATCACTTGAGCCAGTTCACATAACAAAAATAGGGAAATTGAAAGTGACATACACAAATCATATAACGGTAGAGGAAGCTG
ACGACTCGAAAGAAGAACAAAGTTCGACCAACGAACTTCTGTTTTTAGGCACATCAGAGCGTCGGTTGCTCATGCCTTAG
Protein sequenceShow/hide protein sequence
MLASGIFEETISTSPTKPKIVKDEKFSSSPVLRYVPLSRCKKGEESPFTECSENIKVCDIEILKESFTTPLTKITKQEVRRPENDQMKMALLERRMKDGFDPKTYKLLAK
AGYDFTTHTEFKILRIFDGRPELSSTQKKLLMEGYTLPTSRKGLRYKSLEPVHITKIGKLKVTYTNHITVEEADDSKEEQSSTNELLFLGTSERRLLMP