CuGenDBv2

Gene ID	Lag0002675
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Genome location	chr4:44727436..44733895
RNA-Seq Expression	Lag0002675
Synteny	Lag0002675
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0008380 - RNA splicing (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR005576 - RNA polymerase Rpb7-like , N-terminal IPR012340 - Nucleic acid-binding, OB-fold IPR013238 - RNA polymerase III, subunit Rpc25 IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily IPR045113 - RNA polymerase Rpb7-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014295.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-112

94.37

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSG
        DGLGPVSWWDGSG
Subjt:  DGLGPVSWWDGSG

XP_022152296.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia]

8.1e-112

95.33

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+VGEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID
        LGFFEDIYVPIHLLP+PSEFKPD KNGGKRRWVWDYDGQPYDIYETDEIKFRIH+IEYPAIPVEQPKESN KF  EE QPKEST NVKAFAPMIVT TID
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID

Query:  YDGLGPVSWWDGSG
        YDGLGPVSWWDGSG
Subjt:  YDGLGPVSWWDGSG

XP_022954042.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata]

1.2e-112

94.37

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSG
        DGLGPVSWWDGSG
Subjt:  DGLGPVSWWDGSG

XP_022991804.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima]

3.6e-112

93.9

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIHSI+YP IPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSG
        DGLGPVSWWDGSG
Subjt:  DGLGPVSWWDGSG

XP_023547503.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo]

2.5e-113

94.84

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSG
        DGLGPVSWWDGSG
Subjt:  DGLGPVSWWDGSG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CEN6 DNA-directed RNA polymerase III subunit RPC8 isoform X1

8.2e-102

84.91

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPF GE+IIGKV+ES+ NGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD
        LGFFEDIYVP+ L+PS SEF PD  NGG+RRWVW Y+  P+DIYE+DEIKF+IHSIEYPAI VEQPKESNSKFPMEE+PKES NVK FAPM++TA++D D
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD

Query:  GLGPVSWWDGSG
        GLGPVSWWDGSG
Subjt:  GLGPVSWWDGSG

A0A5A7UWI5 DNA-directed RNA polymerase III subunit RPC8 isoform X1

8.2e-102

84.91

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPF GE+IIGKV+ES+ NGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD
        LGFFEDIYVP+ L+PS SEF PD  NGG+RRWVW Y+  P+DIYE+DEIKF+IHSIEYPAI VEQPKESNSKFPMEE+PKES NVK FAPM++TA++D D
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD

Query:  GLGPVSWWDGSG
        GLGPVSWWDGSG
Subjt:  GLGPVSWWDGSG

A0A6J1DFX3 DNA-directed RNA polymerase III subunit RPC8 isoform X2

3.9e-112

95.33

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+VGEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID
        LGFFEDIYVPIHLLP+PSEFKPD KNGGKRRWVWDYDGQPYDIYETDEIKFRIH+IEYPAIPVEQPKESN KF  EE QPKEST NVKAFAPMIVT TID
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID

Query:  YDGLGPVSWWDGSG
        YDGLGPVSWWDGSG
Subjt:  YDGLGPVSWWDGSG

A0A6J1GPX5 DNA-directed RNA polymerase III subunit RPC8

6.0e-113

94.37

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSI+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSG
        DGLGPVSWWDGSG
Subjt:  DGLGPVSWWDGSG

A0A6J1JVU8 DNA-directed RNA polymerase III subunit RPC8

1.8e-112

93.9

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIHSI+YP IPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSG
        DGLGPVSWWDGSG
Subjt:  DGLGPVSWWDGSG

SwissProt top hits

e value

%identity

Alignment

O94285 DNA-directed RNA polymerase III subunit rpc8

2.1e-30

34.26

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I   DG++   VVF LI+FRPF GE+++GK+K     G+R++
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQP--------YDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMI
        + FF+DI++P  +L  P  F+PD     +R WVW  +G+         +DI E  EI+F+I S ++  I  ++ K + +    E        +++ +P  
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQP--------YDIYETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMI

Query:  VTATIDYDGLGPVSWW
        + A+   DGLG  +WW
Subjt:  VTATIDYDGLGPVSWW

P35718 DNA-directed RNA polymerase III subunit RPC8

8.9e-29

31.8

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF LS+I   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + P DG++   V F  +VF+PF+GEI+ G + +  A G+++S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  -LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDE-IKFRIHSIEY----PAIPVEQPKESNSKFPMEEQPKESTNVKAFAP--MI
         LG F+DI++P ++L     + P+     +  W+W  D +    ++ +E I+FRI    +    P  P E+  E  ++   E + K     +   P    
Subjt:  -LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDE-IKFRIHSIEY----PAIPVEQPKESNSKFPMEEQPKESTNVKAFAP--MI

Query:  VTATIDYDGLGPVSWWD
        +  +   DG+G VSWW+
Subjt:  VTATIDYDGLGPVSWWD

Q2T9X1 DNA-directed RNA polymerase III subunit RPC8

3.0e-32

34.88

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF PF+ EI+IGK+K     G+ +S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIYET--DEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +E++FR+    +       P  + +    EE PK+       AP  +  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIYET--DEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

Query:  IDYDGLGPVSWWDGS
        I   GLG +SWW  S
Subjt:  IDYDGLGPVSWWDGS

Q9D2C6 DNA-directed RNA polymerase III subunit RPC8

2.3e-32

35.85

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF PF+ EI+IGK+K     G+ +S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +EI+FR+    +       P  + +    EE PK+       AP  +  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

Query:  IDYDGLGPVSWW
        I   GLG +SWW
Subjt:  IDYDGLGPVSWW

Q9Y535 DNA-directed RNA polymerase III subunit RPC8

1.7e-32

35.85

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF PF+ EI+IGK+K     G+ +S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +EI+FR+    +       P  +++    EE PK+       AP  +  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

Query:  IDYDGLGPVSWW
        I   GLG +SWW
Subjt:  IDYDGLGPVSWW

Arabidopsis top hits

e value

%identity

Alignment

AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein

6.5e-67

56.13

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV   ++VFRPFVGE+I  K KESDANGLR++
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATI
        LGFF+DIYVP  L+P P+  +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ SI YP++P E+ +++                K FAPM+VT  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATI

Query:  DYDGLGPVSWWD
        D DGLGPVSWWD
Subjt:  DYDGLGPVSWWD

AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein

6.5e-59

54.27

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV   ++VFRPFVGE+I  K KESDANGLR++
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DIYVP  L+P P+  +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ SI YP++P E+ +++                K FAPM+VT +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

AT5G59180.1 DNA-directed RNA polymerase II

5.4e-05

26.19

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Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF+   +E  +++ P      + + +  +L K          G  +++  I ++  G I    G  T+ V +  +VFRPF GEI+   V       L   
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFED-----IYVPIHLLPSPSEFK
        +GFF +     I+V  HL+P   EF+
Subjt:  LGFFED-----IYVPIHLLPSPSEFK

Sequences

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CDS sequence

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ATGTTTTTCGATGCCCCGCTCAGGGTAGCTTCGGGTGCTTTTATAGATTTTCCCGTAGGGTTTCCACCACCTTCAGCCTGTTATCAGCATTTGGGCTTGAAGCCCTGGTC
AACCTCGACATTGGACCGAGGCCGACCATCTCCCTCGCCCTCTCCCTTGGGCCGAGGCCGAGGGAGGCGAGTATGGGCCGGAATGAGCTCCGACCCTTCTCCTATCCTTG
TTGCCGCCGCCTCTCTCCCGTCCACTGCTGTCGCCGCTATCATCTTTCTTCCACTCGTGCCGCTGCCACCGTCGTATTTCTCCCTTTCGTCCGCGTGCAGCCTCCGTCCT
AGCGATTTTGCACTGATTTTCTACTCCTCTGAGATAAACCCTCCATTGTCCCCACTTTGTAGCAGCCACCTACTCGTTTTTCTTCCTCACCTCTCCGACGCCAGCGTGAC
CCCTCACCCTCCGACGGTAGCAGTTCAACAGCGCCTCCTTCGACAAGCCCACAACACGACGGTGCAACCCTTTTCGTCTAACGACAGGATCACAAGACCACTGTTGCACG
AGCTCCCCCACGCGAATCTCCTCACATCGCATGCCAAGTATGTTAAGAAACTACAGGAAATTGCTGATGTGATTATGTATGATTATGATACGAGCTGCGATTTTGGATTA
ATTGAGAATAGGACATATTGTATGACCTTACTTGAACAGGACCTGTTCTATGGGTTGTACAAATTTTTGTCAAAGCCCAGTTGTAATGTGGTTAATATTCTGCATATTAG
GTGCGGTGGTTTAAAGTTGCCTTCGCCCATAGCCTCCAAGAATGTATTTTGGTTGGCATTAGACTCGAAGAATATCCAAATGTTCTACCTTAGCCGAATTGAGCACACCT
TACGTGTGCCTCCGAGCATGCTTCACCTACCTATCCTTGATGCTATTAAGGGCGAGCTAGAGAAACTATTCCTGGATAAGGTGGTTGCAAACTTAGGGCTCTGTATTTCT
GTTTATGATATAAGATCAGTTGATGGGGGCTTTATCTTTCCCAGCGATGGCGCTGCAACATACAAGGTTGTTTTCACATTGATTGTGTTTCGTCCATTCGTGGGGGAGAT
AATTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAATATCACTTGGATTTTTCGAGGACATTTATGTTCCCATCCATCTTCTGCCCTCTCCATCTGAATTCA
AGCCCGATCCGAAAAATGGTGGAAAACGCAGATGGGTATGGGACTATGATGGTCAACCATACGACATATATGAAACTGATGAGATAAAATTTAGAATACACAGCATAGAG
TACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGCAATTCAAAATTCCCAATGGAGGAGCAACCCAAAGAGAGTACTAATGTAAAAGCATTTGCCCCCATGATTGTTAC
TGCAACAATTGATTATGATGGATTGGGCCCTGTTTCGTGGTGGGATGGTTCGGGGATGCCGATGCTGAGGCCGAAGCCGAGGTCGAAGAAGATTCCTGAGGTCAACATTC
CATTTTGGTACTGA

mRNA sequence

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Protein sequence

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MFFDAPLRVASGAFIDFPVGFPPPSACYQHLGLKPWSTSTLDRGRPSPSPSPLGRGRGRRVWAGMSSDPSPILVAAASLPSTAVAAIIFLPLVPLPPSYFSLSSACSLRP
SDFALIFYSSEINPPLSPLCSSHLLVFLPHLSDASVTPHPPTVAVQQRLLRQAHNTTVQPFSSNDRITRPLLHELPHANLLTSHAKYVKKLQEIADVIMYDYDTSCDFGL
IENRTYCMTLLEQDLFYGLYKFLSKPSCNVVNILHIRCGGLKLPSPIASKNVFWLALDSKNIQMFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCIS
VYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIE
YPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGMPMLRPKPRSKKIPEVNIPFWY

Lag0002675 (gene) of Sponge gourd (AG-4) v1 genome