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Lag0002754 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002754
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr4:45335928..45336775
RNA-Seq ExpressionLag0002754
SyntenyLag0002754
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0050789 - regulation of biological process (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07150.1 TatD related DNase [Prunus dulcis]5.8e-3849.36Show/hide
Query:  VKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSD
        VKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+S+ V+ I+ + G FSVSI       +  W++G+YGP R R R  
Subjt:  VKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSD

Query:  FWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
        FW+EL DLYG CGD WC+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Subjt:  FWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

CAN68165.1 hypothetical protein VITISV_008538 [Vitis vinifera]2.2e-3746.88Show/hide
Query:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR
        KRR+VK+ +  E PDIV++ ETK+   +R  V S+W +R  +W +L A GASGGI ++WDS+ +   EV+ GSFSVS+ F +      W++ VYGP  + 
Subjt:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR

Query:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
         R DFW EL D++GL   CWCV GDFNVIR   E+  GGR + SM   + FI  + L DP
Subjt:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

CAN74319.1 hypothetical protein VITISV_035345 [Vitis vinifera]5.8e-3847.5Show/hide
Query:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR
        KRR+VK+ +  E PDIV++ ETK+   +R  V SLW +R  +W +L A GASGGI ++WDS+ +   EV+ GSFSVS+ F +      W++ VYGP  + 
Subjt:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR

Query:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
         R DFW+EL D++GL   CWCV GDFNVIR   E+  GGR + SM   + FI  + L DP
Subjt:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

RVW78901.1 hypothetical protein CK203_043153 [Vitis vinifera]1.3e-3747.5Show/hide
Query:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR
        KRR+VK+ +  E PDIV++ ETK+   +R  V S+W +R  +W +L A GASGGI ++WDS+ +   EV+ GSFSVSI F +      W++ VYGP  + 
Subjt:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR

Query:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
         R DFW EL D++GL   CWCV GDFNVIR   E+  GGR + SM   + FI  + L DP
Subjt:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

VVA20479.1 Hypothetical predicted protein, partial [Prunus dulcis]2.4e-3950Show/hide
Query:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR
        KR LVKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+S+ V+ I+ + G FSVSI       +  W++G+YGP R R
Subjt:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR

Query:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
         R  FW+EL DLYG CGD WC+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Subjt:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

TrEMBL top hitse value%identityAlignment
A0A4Y1RS61 TatD related DNase2.8e-3849.36Show/hide
Query:  VKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSD
        VKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+S+ V+ I+ + G FSVSI       +  W++G+YGP R R R  
Subjt:  VKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSD

Query:  FWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
        FW+EL DLYG CGD WC+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Subjt:  FWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

A0A5E4F090 Reverse transcriptase domain-containing protein (Fragment)1.1e-3950Show/hide
Query:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR
        KR LVKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+S+ V+ I+ + G FSVSI       +  W++G+YGP R R
Subjt:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR

Query:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
         R  FW+EL DLYG CGD WC+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Subjt:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

A5B9F0 Reverse transcriptase domain-containing protein2.8e-3847.5Show/hide
Query:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR
        KRR+VK+ +  E PDIV++ ETK+   +R  V SLW +R  +W +L A GASGGI ++WDS+ +   EV+ GSFSVS+ F +      W++ VYGP  + 
Subjt:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR

Query:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
         R DFW+EL D++GL   CWCV GDFNVIR   E+  GGR + SM   + FI  + L DP
Subjt:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

M5VS59 Reverse transcriptase domain-containing protein (Fragment)3.0e-4050Show/hide
Query:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR
        KR LVKE + +  PDIVIL+ETK+ + +R LV  +WGSR+ +W    + G SGGIA+LW+S+ V+ I+ + G FSVSI       +  W++G+YGP R R
Subjt:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR

Query:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
         R+ FW+EL DLYG CGD WC+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Subjt:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)2.3e-4050Show/hide
Query:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR
        KR LVKE + +  PDIVIL+ETK+   +R LV  +WGSR+ +W    + G SGGIA+LW+S+ V+ I+ + G FSVSI       +  W++G+YGP R R
Subjt:  KRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEILEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSR

Query:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP
         R+ FW+EL DLYG CGD WC+ GDFNV+R   E+S+ GR ++SM  FN FI+ + L DP
Subjt:  GRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGSCLTDP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAGCCTTATTCCTTTCTCTAACCCCCTTAACGTGTCGGACGGCTCGTTGAATGGGGGCCCCATCGGTAATTGGCCCTCGGGGTGGGCAGCTTTAGCTTCTGTAGG
CATTCAAGCAATTCCCCCGAAGGAATGTCAAGTAACTCCTATCTCTACGGACAAGGTTCCGATCGTCAGTAAGGATGAGGGGGTTAAGCGTCGTCTGGTGAAAGAGTCTA
TTGCTCAAGAAAATCCGGATATTGTCATTTTAGTGGAGACTAAAAGAGGTAGCTTTAATCGTCATCTGGTGAATAGCTTATGGGGCAGCAGGTATGTGGATTGGGAGATT
CTTGAGGCGGAGGGGGCCTCAGGAGGCATCGCCATTCTCTGGGATAGTAGGGTGGTTACCCCGATCGAAGTCATTAAGGGTTCGTTTTCCGTTTCGATTTCTTTTCGGCT
GAAGGATGAGTCAGTTAGTTGGGTGACAGGAGTTTATGGCCCCCCGAGAAGTAGAGGAAGGTCGGATTTTTGGAAGGAGCTGGAGGATCTTTATGGCCTTTGTGGTGATT
GTTGGTGTGTGGCTGGGGATTTTAATGTGATCCGATCGCCCGTCGAGAGATCTTCCGGGGGTAGATTCTCTAGATCTATGACCCAGTTCAATAAGTTCATTGAGGGGTCG
TGCCTTACGGATCCTCGTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAGCCTTATTCCTTTCTCTAACCCCCTTAACGTGTCGGACGGCTCGTTGAATGGGGGCCCCATCGGTAATTGGCCCTCGGGGTGGGCAGCTTTAGCTTCTGTAGG
CATTCAAGCAATTCCCCCGAAGGAATGTCAAGTAACTCCTATCTCTACGGACAAGGTTCCGATCGTCAGTAAGGATGAGGGGGTTAAGCGTCGTCTGGTGAAAGAGTCTA
TTGCTCAAGAAAATCCGGATATTGTCATTTTAGTGGAGACTAAAAGAGGTAGCTTTAATCGTCATCTGGTGAATAGCTTATGGGGCAGCAGGTATGTGGATTGGGAGATT
CTTGAGGCGGAGGGGGCCTCAGGAGGCATCGCCATTCTCTGGGATAGTAGGGTGGTTACCCCGATCGAAGTCATTAAGGGTTCGTTTTCCGTTTCGATTTCTTTTCGGCT
GAAGGATGAGTCAGTTAGTTGGGTGACAGGAGTTTATGGCCCCCCGAGAAGTAGAGGAAGGTCGGATTTTTGGAAGGAGCTGGAGGATCTTTATGGCCTTTGTGGTGATT
GTTGGTGTGTGGCTGGGGATTTTAATGTGATCCGATCGCCCGTCGAGAGATCTTCCGGGGGTAGATTCTCTAGATCTATGACCCAGTTCAATAAGTTCATTGAGGGGTCG
TGCCTTACGGATCCTCGTTGGTGA
Protein sequenceShow/hide protein sequence
MGSLIPFSNPLNVSDGSLNGGPIGNWPSGWAALASVGIQAIPPKECQVTPISTDKVPIVSKDEGVKRRLVKESIAQENPDIVILVETKRGSFNRHLVNSLWGSRYVDWEI
LEAEGASGGIAILWDSRVVTPIEVIKGSFSVSISFRLKDESVSWVTGVYGPPRSRGRSDFWKELEDLYGLCGDCWCVAGDFNVIRSPVERSSGGRFSRSMTQFNKFIEGS
CLTDPRW