CuGenDBv2

Gene ID	Lag0002765
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Genome location	chr4:45430298..45432222
RNA-Seq Expression	Lag0002765
Synteny	Lag0002765
Gene Ontology terms	GO:0006366 - transcription by RNA polymerase II (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0001055 - RNA polymerase II activity (molecular function) GO:0003677 - DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR008193 - DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site IPR009025 - DNA-directed RNA polymerase, RBP11-like dimerisation domain IPR036603 - RNA polymerase, RBP11-like subunit IPR037685 - RNA polymerase RBP11

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0058617.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. makuwa]

1.6e-53

94.74

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFEVMLSLPLD
        LK+E EVMLSLPLD
Subjt:  LKFEFEVMLSLPLD

KAG6593293.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-49

95.28

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFE
        LK+E E
Subjt:  LKFEFE

TYK10426.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo var. makuwa]

5.2e-60

75.29

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFEVMLSLPLD---HLSAIWMMANFQDSRGPIRFAFKENQVEVLLSDHYRISILCQLNKFELEMECQ
        LK+E EVMLSLPLD    LSAI +   FQ SRGPI F  K+ + +             + N  EL MECQ
Subjt:  LKFEFEVMLSLPLD---HLSAIWMMANFQDSRGPIRFAFKENQVEVLLSDHYRISILCQLNKFELEMECQ

XP_022150995.1 DNA-directed RNA polymerases II, IV and V subunit 11-like [Momordica charantia]

1.7e-50

92.73

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RIHTASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFEVMLS
        LKFE E  LS
Subjt:  LKFEFEVMLS

XP_023004699.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita maxima]

1.4e-49

95.28

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFE
        LK+E E
Subjt:  LKFEFE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UV57 DNA-directed RNA polymerases II, IV and V subunit 11-like

7.9e-54

94.74

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFEVMLSLPLD
        LK+E EVMLSLPLD
Subjt:  LKFEFEVMLSLPLD

A0A5D3CJ64 DNA-directed RNA polymerases II, IV and V subunit 11-like

2.5e-60

75.29

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNI+RMQLHRDDNVLFA YQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFEVMLSLPLD---HLSAIWMMANFQDSRGPIRFAFKENQVEVLLSDHYRISILCQLNKFELEMECQ
        LK+E EVMLSLPLD    LSAI +   FQ SRGPI F  K+ + +             + N  EL MECQ
Subjt:  LKFEFEVMLSLPLD---HLSAIWMMANFQDSRGPIRFAFKENQVEVLLSDHYRISILCQLNKFELEMECQ

A0A6J1DA06 DNA-directed RNA polymerases II, IV and V subunit 11-like

8.1e-51

92.73

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHT+GNI+RMQLHRDDNVLFAAYQLPHPLKYRIL+RIHTASQSSPMQAYNQA+NDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFEVMLS
        LKFE E  LS
Subjt:  LKFEFEVMLS

A0A6J1H8G6 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

6.9e-50

95.28

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFE
        LK+E E
Subjt:  LKFEFE

A0A6J1KX24 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1

6.9e-50

95.28

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFI+EREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRI TASQSSPMQAYNQAINDLDKELD+
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFE
        LK+E E
Subjt:  LKFEFE

SwissProt top hits

e value

%identity

Alignment

O08740 DNA-directed RNA polymerase II subunit RPB11

3.7e-24

47.62

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+ T    SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEF
        L+  F
Subjt:  LKFEF

P52435 DNA-directed RNA polymerase II subunit RPB11-a

1.3e-24

46.79

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+ T    SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFEVML
        L+  F V +
Subjt:  LKFEFEVML

Q32P79 DNA-directed RNA polymerase II subunit RPB11

1.3e-24

46.79

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P  +E F++ EG KK++  +DTK+ NA  F + +EDHT+GNII+ QL +D  VLFA Y++PHPL+++I++R+ T    SP +A+  AI DL  EL L
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFEVML
        L+  F V +
Subjt:  LKFEFEVML

Q38859 DNA-directed RNA polymerases II, IV and V subunit 11

1.8e-47

83.96

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Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VRIHT SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFE
        LK +FE
Subjt:  LKFEFE

Q86JJ5 DNA-directed RNA polymerase II subunit rpb11

2.1e-24

47.62

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN PDR+E FV+P+GAKKV+  RDTKI NA+ F + +EDHTIGN+IRMQL  D +++FA Y++PHPL++ + +RI T + ++P++   +++  L +E   
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEF
        L+  F
Subjt:  LKFEF

Arabidopsis top hits

e value

%identity

Alignment

AT3G52090.1 DNA-directed RNA polymerase, RBP11-like

1.3e-48

83.96

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VRIHT SQSSPMQAYNQAINDLDKELD 
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDL

Query:  LKFEFE
        LK +FE
Subjt:  LKFEFE

AT3G52090.2 DNA-directed RNA polymerase, RBP11-like

7.3e-44

65.44

Show/hide

Query:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR--------------------------
        MN P+RYERFVVPEG KKVSY+RDTKI+NAA+F +EREDHTIGNI+RMQLHRD+NVLFA YQLPHPLKY+I+VR                          
Subjt:  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVR--------------------------

Query:  ----IHTASQSSPMQAYNQAINDLDKELDLLKFEFE
            IHT SQSSPMQAYNQAINDLDKELD LK +FE
Subjt:  ----IHTASQSSPMQAYNQAINDLDKELDLLKFEFE

Sequences

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CDS sequence

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ATGAATGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCCGAGGGCGCCAAGAAGGTTTCATACGAGAGAGACACGAAGATCATGAACGCGGCGACCTTTATATTAGAGAG
AGAGGATCACACCATTGGAAACATCATCCGCATGCAACTTCACAGAGACGATAATGTGCTGTTTGCTGCGTATCAGCTTCCTCATCCTCTAAAGTACAGAATACTTGTCC
GGATACACACGGCTAGCCAGTCTTCACCGATGCAGGCATATAATCAGGCTATTAATGATTTGGACAAGGAGCTTGACCTTTTGAAATTTGAGTTCGAGGTAATGCTTTCA
CTCCCCCTTGACCATTTGTCTGCAATTTGGATGATGGCGAACTTTCAAGATTCTCGAGGACCTATTAGGTTTGCCTTCAAAGAAAACCAGGTGGAAGTTCTGTTATCTGA
CCATTATAGAATTTCGATTCTTTGCCAACTCAATAAATTTGAGTTGGAAATGGAATGCCAAAAATAA

mRNA sequence

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Protein sequence

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MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNIIRMQLHRDDNVLFAAYQLPHPLKYRILVRIHTASQSSPMQAYNQAINDLDKELDLLKFEFEVMLS
LPLDHLSAIWMMANFQDSRGPIRFAFKENQVEVLLSDHYRISILCQLNKFELEMECQK

Lag0002765 (gene) of Sponge gourd (AG-4) v1 genome