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Lag0002780 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002780
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPhotosystem II protein D1
Genome locationchr4:45581084..45583334
RNA-Seq ExpressionLag0002780
SyntenyLag0002780
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0009536 - plastid (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR036854 - Photosystem II protein D1/D2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
A1E9Y8 Photosystem II protein D13.4e-0462.5Show/hide
Query:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
        W L F  GM P I VAYS  V AA  VFLIY +GQG+FSD
Subjt:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
A4QJ96 Photosystem II protein D13.4e-0462.5Show/hide
Query:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
        W L F  GM P I VAYS  V AA  VFLIY +GQG+FSD
Subjt:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
A4QJI0 Photosystem II protein D13.4e-0462.5Show/hide
Query:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
        W L F  GM P I VAYS  V AA  VFLIY +GQG+FSD
Subjt:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
P13910 Photosystem II protein D11.2e-0465Show/hide
Query:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
        W L F  GM P IVVAYS  V AA  VFLIY +GQG+FSD
Subjt:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
Q3V554 Photosystem II protein D13.4e-0462.5Show/hide
Query:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
        W L F  GM P I VAYS  V AA  VFLIY +GQG+FSD
Subjt:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
Arabidopsis top hitse value%identityAlignment
ATCG00020.1 photosystem II reaction center protein A2.4e-0562.5Show/hide
Query:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD
        W L F  GM P I VAYS  V AA  VFLIY +GQG+FSD
Subjt:  WNLCF--GMCPLIVVAYSTHVVAANNVFLIYLVGQGAFSD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGCGACGAAATCGAATTTTCGTCGCAAGCTTGCGACGAAATCAATGTTTCGTCGCAAAGCCTGCGACGAAATCAACGTTTCGTCGCAAAGCCTGCGACGGAAAGA
GTTTTTCGTCGCAATCTTGCGACTAATCTTTTGTTTCGTCGCTAACGTTGCGACGAATTGGGCAAAAGCAGAGAGAGAAGAGATGACAAGAAGATCAGATCAGAATCAGA
AGAATCAGACACTTTGGAACCTTTGTTTTGGTATGTGCCCTTTGATTGTTGTTGCATATTCAACTCATGTTGTAGCTGCTAATAATGTTTTCTTGATCTACCTAGTTGGT
CAAGGAGCCTTTTCTGACGCTGAGCTCCACCGGCTGTTGCAATGGCTTTACTCTTCCTTCTCTTTTTTGCTGGGTCGAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGCGACGAAATCGAATTTTCGTCGCAAGCTTGCGACGAAATCAATGTTTCGTCGCAAAGCCTGCGACGAAATCAACGTTTCGTCGCAAAGCCTGCGACGGAAAGA
GTTTTTCGTCGCAATCTTGCGACTAATCTTTTGTTTCGTCGCTAACGTTGCGACGAATTGGGCAAAAGCAGAGAGAGAAGAGATGACAAGAAGATCAGATCAGAATCAGA
AGAATCAGACACTTTGGAACCTTTGTTTTGGTATGTGCCCTTTGATTGTTGTTGCATATTCAACTCATGTTGTAGCTGCTAATAATGTTTTCTTGATCTACCTAGTTGGT
CAAGGAGCCTTTTCTGACGCTGAGCTCCACCGGCTGTTGCAATGGCTTTACTCTTCCTTCTCTTTTTTGCTGGGTCGAGATTGA
Protein sequenceShow/hide protein sequence
MLATKSNFRRKLATKSMFRRKACDEINVSSQSLRRKEFFVAILRLIFCFVANVATNWAKAEREEMTRRSDQNQKNQTLWNLCFGMCPLIVVAYSTHVVAANNVFLIYLVG
QGAFSDAELHRLLQWLYSSFSFLLGRD