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Lag0002824 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002824
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr4:46002684..46003217
RNA-Seq ExpressionLag0002824
SyntenyLag0002824
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0805000.1 hypothetical protein [Gossypium harknessii]1.8e-1537.96Show/hide
Query:  NWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGT
        +W PP   + K+N D A+    + S  G + RNA G VLG+          P M E LA L+GL+FA D+G   +++E D    I  I +   +R+ IG 
Subjt:  NWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGT

Query:  FVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS
        +V++I +RA  F KI F  V R  N VA  ++K ARS
Subjt:  FVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS

OMO99660.1 hypothetical protein COLO4_13164 [Corchorus olitorius]2.4e-1534.56Show/hide
Query:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTF
        W  P  GV+K+N D +++   K    G I R+ +GNVLGA+A   EL      AECLA L+ + +A+D+G + I+LE D L  I  +     + + IG +
Subjt:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTF

Query:  VDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS
        + +I   + +F    F +V R GNV+A  ++ +  S
Subjt:  VDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS

TXG47194.1 hypothetical protein EZV62_026488 [Acer yangbiense]1.1e-1535.1Show/hide
Query:  PLQRLLLGDKTI-NWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGL
        P+Q  L+ D+ +  W  P  G++KIN DAA      ++ +G++ RN  G V+ +        FSP +AE LA+LEGL+ A+  G    +LESD L  +  
Subjt:  PLQRLLLGDKTI-NWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGL

Query:  INKDEDERNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSD
        I ++E   +++G  +DDI      F+   F +VPR+ N VA  ++K+A S+
Subjt:  INKDEDERNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSD

XP_023878301.1 uncharacterized protein LOC111990748 [Quercus suber]1.8e-1535.21Show/hide
Query:  INWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIG
        I W  P  G++K+NVD A  +  +NS +G+I R+++G V+ A+  +    F+    E LA+ +G+  A DL L R+ILE D L  I  +N D    NE+G
Subjt:  INWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIG

Query:  TFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSDKCS
          +  I   + +F    F +V R  NVVA  ++++AR ++ S
Subjt:  TFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSDKCS

XP_030964152.1 uncharacterized protein LOC115985344 [Quercus lobata]1.8e-1535.07Show/hide
Query:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTF
        W PP   V+K+N DAA      ++ +G+I R+  G V+GA++    +  S    E LA    +KFA ++GL R++ E D    I  I+  + ++   G  
Subjt:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTF

Query:  VDDIHRRALAFSKIDFFYVPRIGNVVADAISKVA
        ++DI   A  F  ++F YVPR+ N VADA++K A
Subjt:  VDDIHRRALAFSKIDFFYVPRIGNVVADAISKVA

TrEMBL top hitse value%identityAlignment
A0A1R3JXX0 RNase H domain-containing protein1.2e-1534.56Show/hide
Query:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTF
        W  P  GV+K+N D +++   K    G I R+ +GNVLGA+A   EL      AECLA L+ + +A+D+G + I+LE D L  I  +     + + IG +
Subjt:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTF

Query:  VDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS
        + +I   + +F    F +V R GNV+A  ++ +  S
Subjt:  VDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS

A0A5B7A5C8 Uncharacterized protein1.1e-1633.57Show/hide
Query:  LGDKTINWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDE
        +G  + +W PP+ GV+K+N+D +W  GE    +G + R+  G V+G  A       S   A+ +AIL G+ FA D+G+ ++++E DCLG I  I     +
Subjt:  LGDKTINWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDE

Query:  RNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS
         +++G  +DDI      F   +  +V R  N VA A++   RS
Subjt:  RNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS

A0A5B7BU49 RNase H domain-containing protein (Fragment)3.1e-1636.18Show/hide
Query:  LQRLLLGDKTINWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVA----TFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAI
        + R+ +GD  + W+PP  G++K+NV A+W  GE    +G + R+  G V+G  A    T   ++F    AE LAIL GL FA+D+GL  + +E DCL  +
Subjt:  LQRLLLGDKTINWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVA----TFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAI

Query:  GLINKDEDERNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS
          I    ++ +E+G   D I +    F   DF +V R  N VA  I+  AR+
Subjt:  GLINKDEDERNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS

A0A5C7GQX3 RNase H domain-containing protein5.2e-1635.1Show/hide
Query:  PLQRLLLGDKTI-NWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGL
        P+Q  L+ D+ +  W  P  G++KIN DAA      ++ +G++ RN  G V+ +        FSP +AE LA+LEGL+ A+  G    +LESD L  +  
Subjt:  PLQRLLLGDKTI-NWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGL

Query:  INKDEDERNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSD
        I ++E   +++G  +DDI      F+   F +VPR+ N VA  ++K+A S+
Subjt:  INKDEDERNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSD

A0A7J9H5B2 RNase H domain-containing protein8.9e-1637.96Show/hide
Query:  NWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGT
        +W PP   + K+N D A+    + S  G + RNA G VLG+          P M E LA L+GL+FA D+G   +++E D    I  I +   +R+ IG 
Subjt:  NWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGT

Query:  FVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS
        +V++I +RA  F KI F  V R  N VA  ++K ARS
Subjt:  FVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein2.3e-0829.6Show/hide
Query:  KINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTFVDDIHRRAL
        K N DA+  EG+  S LG + RN+ G VL       +   +P  AEC A++  ++     G  ++I E D      LIN   D    +  ++D I     
Subjt:  KINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTFVDDIHRRAL

Query:  AFSKIDFFYVPRIGNVVADAISKVA
        +F+  +F +  R  N  AD + K A
Subjt:  AFSKIDFFYVPRIGNVVADAISKVA

AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-0829.5Show/hide
Query:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTF
        W  P     K N DA +     +S    I RN DG      +   +   +P  AE  A+L  L+     G  R+I+E DC     L++      N +   
Subjt:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTF

Query:  VDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSDKC
        +DDI   A  FS + F +V R GN VA  ++K+  +  C
Subjt:  VDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSDKC

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.0e-0930.33Show/hide
Query:  INVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTFVDDIHRRALA
        I  DAAWK   K+   G + RN          +       P MAE +A+   L++A+ +G+ ++ + SD    I  I   E    E    + DI   +L 
Subjt:  INVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIGTFVDDIHRRALA

Query:  FSKIDFFYVPRIGNVVADAISK
        F+ + F +VPR  N VAD ++K
Subjt:  FSKIDFFYVPRIGNVVADAISK

AT4G29090.1 Ribonuclease H-like superfamily protein1.0e-0829.86Show/hide
Query:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNV--LGAVATFEELEFSPPMAECL-AILEGLKFAEDLGLDR-----IILESDCLGAIGLINKDED
        W PP     K N DA W    +   +G + RN  G V  +GA A        P +   L A LE +++A  L L R     +I ESD    I ++N DE 
Subjt:  WNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNV--LGAVATFEELEFSPPMAECL-AILEGLKFAEDLGLDR-----IILESDCLGAIGLINKDED

Query:  ERNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS
          + +   + D+ R    F+++ F ++PR GN +A+ +++ + S
Subjt:  ERNEIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARS

AT5G19270.1 unknown protein1.8e-0829.5Show/hide
Query:  INWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIG
        +NW PP  G+ K NV+A W   +  S +  I R+ +G  L           +  MAE   IL  +K   DL L  +I+ SDC  AI  +    D      
Subjt:  INWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERNEIG

Query:  TFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSD
         ++D I     +F  I F  V    N +A  I++    D
Subjt:  TFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCCCCTGCAGCGTCTTCTTCTTGGAGATAAGACCATTAATTGGAATCCTCCGCTCGCTGGAGTTTGGAAAATAAATGTCGATGCGGCCTGGAAAGAAGGTGAGAA
GAACTCGAGGTTGGGGATAATATGCCGGAACGCTGATGGTAACGTGCTGGGAGCGGTGGCTACTTTCGAGGAGCTGGAATTTTCCCCTCCTATGGCAGAATGTTTGGCAA
TTCTGGAAGGTTTAAAATTCGCAGAGGATCTAGGGCTGGACAGAATCATTCTTGAATCGGATTGTCTAGGTGCAATTGGCCTCATCAACAAGGATGAAGATGAGCGGAAT
GAGATAGGAACATTCGTTGATGATATTCACCGAAGAGCTCTGGCGTTCTCGAAAATTGATTTTTTTTATGTTCCTCGAATTGGCAATGTTGTAGCAGATGCCATATCTAA
AGTAGCTAGAAGTGATAAGTGTTCTGGGACCGTGAGGTTCCGGATTGGATTCATGTATTGGTCCTTCGTGACCGTTTTCCTGTTGCCCCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCCCCTGCAGCGTCTTCTTCTTGGAGATAAGACCATTAATTGGAATCCTCCGCTCGCTGGAGTTTGGAAAATAAATGTCGATGCGGCCTGGAAAGAAGGTGAGAA
GAACTCGAGGTTGGGGATAATATGCCGGAACGCTGATGGTAACGTGCTGGGAGCGGTGGCTACTTTCGAGGAGCTGGAATTTTCCCCTCCTATGGCAGAATGTTTGGCAA
TTCTGGAAGGTTTAAAATTCGCAGAGGATCTAGGGCTGGACAGAATCATTCTTGAATCGGATTGTCTAGGTGCAATTGGCCTCATCAACAAGGATGAAGATGAGCGGAAT
GAGATAGGAACATTCGTTGATGATATTCACCGAAGAGCTCTGGCGTTCTCGAAAATTGATTTTTTTTATGTTCCTCGAATTGGCAATGTTGTAGCAGATGCCATATCTAA
AGTAGCTAGAAGTGATAAGTGTTCTGGGACCGTGAGGTTCCGGATTGGATTCATGTATTGGTCCTTCGTGACCGTTTTCCTGTTGCCCCTGTGA
Protein sequenceShow/hide protein sequence
MKPLQRLLLGDKTINWNPPLAGVWKINVDAAWKEGEKNSRLGIICRNADGNVLGAVATFEELEFSPPMAECLAILEGLKFAEDLGLDRIILESDCLGAIGLINKDEDERN
EIGTFVDDIHRRALAFSKIDFFYVPRIGNVVADAISKVARSDKCSGTVRFRIGFMYWSFVTVFLLPL