CuGenDBv2

Gene ID	Lag0002913
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Tubulin gamma chain
Genome location	chr4:46656626..46657365
RNA-Seq Expression	Lag0002913
Synteny	Lag0002913
Gene Ontology terms	GO:0000070 - mitotic sister chromatid segregation (biological process) GO:0000212 - meiotic spindle organization (biological process) GO:0007020 - microtubule nucleation (biological process) GO:0007052 - mitotic spindle organization (biological process) GO:0031122 - cytoplasmic microtubule organization (biological process) GO:0000930 - gamma-tubulin complex (cellular component) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005819 - spindle (cellular component) GO:0005874 - microtubule (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005200 - structural constituent of cytoskeleton (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR000217 - Tubulin IPR003008 - Tubulin/FtsZ, GTPase domain IPR036525 - Tubulin/FtsZ, GTPase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

EYU38962.1 hypothetical protein MIMGU_mgv1a004407mg [Erythranthe guttata]

2.8e-16

95.56

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Query:  LKNMPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        L+NMPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  LKNMPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

KAB5569354.1 hypothetical protein DKX38_003147 [Salix brachista]

1.1e-15

75.44

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFASLLHVLENWERDEEMN
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGI+KDGILEDFA+   V+   +  E  N
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFASLLHVLENWERDEEMN

KMT20356.1 hypothetical protein BVRB_1g003550 [Beta vulgaris subsp. vulgaris]

4.0e-15

93.18

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Query:  KNMPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        + MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  KNMPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

XP_009790661.1 PREDICTED: tubulin gamma-1 chain-like [Nicotiana sylvestris]

3.1e-15

100

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

XP_023746442.1 tubulin gamma-1 chain [Lactuca sativa]

6.9e-15

97.62

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

TrEMBL top hits

e value

%identity

Alignment

A0A022RF26 Tubulin gamma chain

1.4e-16

95.56

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Query:  LKNMPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        L+NMPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  LKNMPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

A0A1S4DDF2 Tubulin gamma chain

1.5e-15

100

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

A0A1U7XM15 Tubulin gamma chain

1.5e-15

100

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

A0A5N5NPC1 Uncharacterized protein

5.2e-16

75.44

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFASLLHVLENWERDEEMN
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGI+KDGILEDFA+   V+   +  E  N
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFASLLHVLENWERDEEMN

A0A6J1IY64 Tubulin gamma chain

3.3e-15

97.62

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

SwissProt top hits

e value

%identity

Alignment

P34785 Tubulin gamma chain

5.9e-17

92.86

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISK+G+LEDFA+
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

P38557 Tubulin gamma-1 chain

9.0e-18

97.62

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

P38558 Tubulin gamma-2 chain

9.0e-18

97.62

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

Q41807 Tubulin gamma-1 chain

7.7e-17

90.48

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIIT+QVGQCGNQIGMEFWKQLCLEHGI KDG+LEDFA+
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

Q9XFG3 Tubulin gamma chain

9.0e-18

97.62

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

Arabidopsis top hits

e value

%identity

Alignment

AT3G61650.1 gamma-tubulin

6.4e-19

97.62

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

AT4G20890.1 tubulin beta-9 chain

1.3e-06

60.61

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Query:  REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG
        REI+ +Q GQCGNQIG +FW+ +C EHGI + G
Subjt:  REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG

AT5G05620.1 gamma-tubulin complex protein 2

6.4e-19

97.62

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Query:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS
        MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFA+
Subjt:  MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFAS

AT5G23860.1 tubulin beta 8

9.6e-07

60.61

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Query:  REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG
        REI+ +Q GQCGNQIG +FW+ +C EHGI   G
Subjt:  REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG

AT5G23860.2 tubulin beta 8

9.6e-07

60.61

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Query:  REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG
        REI+ +Q GQCGNQIG +FW+ +C EHGI   G
Subjt:  REIITLQVGQCGNQIGMEFWKQLCLEHGISKDG

Sequences

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CDS sequence

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ATGGTGCCTCTGTCCGTCCAATGCCCCATTTTTACTCTAAATAGAGAACCAAAACTTCCAGCAAAACCACTTTCTCAGTCCTTTCCTTTCCCTCTCTTTCTCCTTCCCAT
TAAAAACACTTTCGCGCCAGACCCAGATTCTCGATTGCAAGATTCCTCTCTCCCACCTTCCTTCGTTGTCGTTTCCCTTCTTTTAGCTAGCCCTAGTTTCCTAAAGAACA
TGCCGAGAGAGATCATCACTCTGCAAGTTGGACAATGTGGGAATCAGATCGGAATGGAGTTCTGGAAGCAGCTATGCCTCGAGCATGGAATCAGTAAAGATGGCATTCTG
GAAGATTTTGCTTCTCTTCTTCATGTACTGGAAAATTGGGAGAGAGATGAGGAAATGAACAGTATTGGCATTATGGGCAATTGGGTTGGACTGTGCTGGCTTCTTTTGGG
TGATCTCGTGGAAATGAGCTCACGCGAAGGGTTATTCATAGCATCGGGTCACTGGGGCATTGGATGGACAGATGGGGTATTGTAA

mRNA sequence

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Protein sequence

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MVPLSVQCPIFTLNREPKLPAKPLSQSFPFPLFLLPIKNTFAPDPDSRLQDSSLPPSFVVVSLLLASPSFLKNMPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGIL
EDFASLLHVLENWERDEEMNSIGIMGNWVGLCWLLLGDLVEMSSREGLFIASGHWGIGWTDGVL

Lag0002913 (gene) of Sponge gourd (AG-4) v1 genome