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Lag0002972 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0002972
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr4:47123327..47124333
RNA-Seq ExpressionLag0002972
SyntenyLag0002972
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053507.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-0856.67Show/hide
Query:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL
        DK+VEE+LAER RR   P R + E+LVKWK LP  EISWER EDL+    +I +F+ R+L
Subjt:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL

XP_022148918.1 uncharacterized protein LOC111017468 [Momordica charantia]2.5e-1670.77Show/hide
Query:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL
        + N  DKEVE +LAERTRRV +PRRD+QEFLVKWKGLP+ EI WE TEDLKT    I EFEQR L
Subjt:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL

XP_023518073.1 uncharacterized protein LOC111781615 [Cucurbita pepo subsp. pepo]5.0e-0949.23Show/hide
Query:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL
        +K     E+E++LA+R R++G P + ++EFLVKWK LP+ E SWERTEDL +A   I  FE  +L
Subjt:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL

XP_038882325.1 uncharacterized protein LOC120073574 [Benincasa hispida]3.7e-1262.9Show/hide
Query:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQ
        MK+ A+KEV ++L +RTRR+G PRR+L EFLVKWK LP+ EISWER +D K AA  I  FEQ
Subjt:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQ

XP_038885892.1 uncharacterized mitochondrial protein AtMg00810-like [Benincasa hispida]1.8e-1166.67Show/hide
Query:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAA
        MK+ A+KEV ++L +RTRR+G P+R+L EFLVKWK LP+ EISWER EDLK+AA
Subjt:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAA

TrEMBL top hitse value%identityAlignment
A0A5A7UG93 Reverse transcriptase7.0e-0956.67Show/hide
Query:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL
        DK+VEE+LAER RR   P R + E+LVKWK LP  EISWER EDL+    +I +F+ R+L
Subjt:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL

A0A5A7UXP7 Chromo domain-containing protein1.6e-0850.77Show/hide
Query:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL
        +  + DK+VEE+LAER RR   P R + E+LVKWK LP  E SWER EDL+    +I +F+ R+L
Subjt:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL

A0A5A7VG74 Reverse transcriptase1.2e-0856.67Show/hide
Query:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL
        DKEVEE+LAER RR   P R + E+LVKWK LP  E SWER EDL+    +I +F+ R+L
Subjt:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL

A0A5D3BSY6 Gag-protease polyprotein1.6e-0850.77Show/hide
Query:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL
        +  + DK+VEE+LAER RR   P R + E+LVKWK LP  E SWER EDL+    +I +F+ R+L
Subjt:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL

A0A6J1D5E5 uncharacterized protein LOC1110174681.2e-1670.77Show/hide
Query:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL
        + N  DKEVE +LAERTRRV +PRRD+QEFLVKWKGLP+ EI WE TEDLKT    I EFEQR L
Subjt:  MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQREL

SwissProt top hitse value%identityAlignment
F4IV99 Protein CHROMATIN REMODELING 58.5e-0432.14Show/hide
Query:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQRELDVHGEVEWFGEDKRYVEKMRLLGK
        + +VE ++A+R  + G     + E+LVKW+GL  AE +WE+  D+  A + I E++ RE+ +           + VE+ R  GK
Subjt:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQRELDVHGEVEWFGEDKRYVEKMRLLGK

Arabidopsis top hitse value%identityAlignment
AT2G13370.1 chromatin remodeling 56.1e-0532.14Show/hide
Query:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQRELDVHGEVEWFGEDKRYVEKMRLLGK
        + +VE ++A+R  + G     + E+LVKW+GL  AE +WE+  D+  A + I E++ RE+ +           + VE+ R  GK
Subjt:  DKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQRELDVHGEVEWFGEDKRYVEKMRLLGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAACGTCGCCGATAAAGAAGTCGAGGAAGTGTTAGCAGAAAGGACCCGTCGCGTCGGCAACCCACGACGGGATCTACAAGAGTTCTTAGTGAAGTGGAAGGGGCT
CCCAGAGGCCGAAATCAGTTGGGAGCGCACTGAAGACCTGAAGACTGCTGCCCTCCAGATCCCAGAGTTCGAGCAGCGCGAGCTTGATGTTCATGGTGAAGTGGAGTGGT
TTGGAGAAGACAAGAGGTACGTAGAGAAAATGAGATTGTTGGGAAAAGTTGTTGGAAATGGTGGTAATTGGTTGCAGATGGAATTTTATTCAATGTCGATGGTGTTCATG
GTGTTGGACAATGCAAATTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAACGTCGCCGATAAAGAAGTCGAGGAAGTGTTAGCAGAAAGGACCCGTCGCGTCGGCAACCCACGACGGGATCTACAAGAGTTCTTAGTGAAGTGGAAGGGGCT
CCCAGAGGCCGAAATCAGTTGGGAGCGCACTGAAGACCTGAAGACTGCTGCCCTCCAGATCCCAGAGTTCGAGCAGCGCGAGCTTGATGTTCATGGTGAAGTGGAGTGGT
TTGGAGAAGACAAGAGGTACGTAGAGAAAATGAGATTGTTGGGAAAAGTTGTTGGAAATGGTGGTAATTGGTTGCAGATGGAATTTTATTCAATGTCGATGGTGTTCATG
GTGTTGGACAATGCAAATTTGTGA
Protein sequenceShow/hide protein sequence
MKNVADKEVEEVLAERTRRVGNPRRDLQEFLVKWKGLPEAEISWERTEDLKTAALQIPEFEQRELDVHGEVEWFGEDKRYVEKMRLLGKVVGNGGNWLQMEFYSMSMVFM
VLDNANL