; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0003095 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0003095
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein WHI4
Genome locationchr4:48024462..48027949
RNA-Seq ExpressionLag0003095
SyntenyLag0003095
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025857.1 RNA-binding protein with multiple splicing 2 [Cucurbita argyrosperma subsp. argyrosperma]3.8e-13594.9Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N  SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

XP_022964622.1 protein WHI4 [Cucurbita moschata]7.6e-13695.29Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

XP_023000385.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima]2.9e-13595.29Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

XP_023513427.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]3.4e-13695.69Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

XP_038898771.1 protein WHI4 isoform X1 [Benincasa hispida]1.2e-13393.73Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLY+QPDP YSDRSNINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK+TD+N+QETSSDDGGSEPDEPSK+ EQS EA+VTP   NALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

TrEMBL top hitse value%identityAlignment
A0A0A0K772 Uncharacterized protein3.8e-13392.94Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPDP YS+RSNINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK+TD+N+QETSSDDGGSEPDEPSK+ +QSNEAVVTP   NA+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

A0A5A7V0X3 Protein WHI42.9e-13392.94Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPDP YSDRSNINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK+TD+N+QETSSDDGGSEPDEPSK+ +QSNEAVVTP   +A+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

A0A6J1D3Z3 uncharacterized protein LOC111017052 isoform X16.5e-13393.33Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++D NAQETSSDDGGSEPDEPSK+TE+S+EAV+TP   NALS PYEHHEK DGG CSTLFIANLGPNCNEDEL E
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VLSKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGSMLPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

A0A6J1HI97 protein WHI43.7e-13695.29Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

A0A6J1KI66 U2 small nuclear ribonucleoprotein B'' 21.4e-13595.29Show/hide
Query:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a5.8e-1440Show/hide
Query:  QPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + + + S    + TLF+SGLP D+KPRE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP+S   L +E A++N++
Subjt:  QPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q6ZRY4 RNA-binding protein with multiple splicing 23.8e-1342.86Show/hide
Query:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+KPRE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q8VC52 RNA-binding protein with multiple splicing 23.8e-1342.86Show/hide
Query:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+KPRE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9W6I1 RNA-binding protein with multiple splicing 21.7e-1342.86Show/hide
Query:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+KPRE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9YGP5 RNA-binding protein with multiple splicing 22.6e-1441.76Show/hide
Query:  NYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        N +    + TLF+SGLP D+KPRE++ LFR   G++   +K T +  Q V F TF N   A  A +ALNG++FDP++   L +E A++N++
Subjt:  NYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-3837.4Show/hide
Query:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVKPREI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T+++ G      P   +   N    +P     ++     AP          PC TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG
        EL +V S+  GF  LK++   G PVAF DF+++  +S+ +  LQG++L SS  G
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-3837.4Show/hide
Query:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVKPREI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T+++ G      P   +   N    +P     ++     AP          PC TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG
        EL +V S+  GF  LK++   G PVAF DF+++  +S+ +  LQG++L SS  G
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-3837.4Show/hide
Query:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE
        AH  Y P ++      +   R  + TLF++GLP+DVKPREI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+
Subjt:  AHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIE

Query:  LARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNED
        LA+SN + K       +  + K K     +  T+++ G      P   +   N    +P     ++     AP          PC TLFIAN+GPNC E 
Subjt:  LARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNED

Query:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG
        EL +V S+  GF  LK++   G PVAF DF+++  +S+ +  LQG++L SS  G
Subjt:  ELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-8056.46Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN
        HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVK REIHNLFRRR GF+SCQLKYTGRG+Q                  VVAFATF +
Subjt:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN

Query:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE---------PSKRTEQSNEAVVTPGPRNA
        H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R +  S +Q+  SD+G S+PDE         P +     +EA   P  + A
Subjt:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE---------PSKRTEQSNEAVVTPGPRNA

Query:  LSAPYEHHEKNDGG----PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
         SA     + ++GG     CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  M  LQG++L SSDRGGMHIE
Subjt:  LSAPYEHHEKNDGG----PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.7e-8360.14Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP
        HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVK REIHNLFRRR GF+SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDP
Subjt:  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP

Query:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE---------PSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGG----
        Q+GS LHIELARSNSRRK +PG G YVVID R +  S +Q+  SD+G S+PDE         P +     +EA   P  + A SA     + ++GG    
Subjt:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE---------PSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGG----

Query:  PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
         CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  M  LQG++L SSDRGGMHIE
Subjt:  PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCACCAGCCTTACGATCCTTACTATCTCTATCATCAACCGGACCCTAACTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGATGT
CAAGCCTCGCGAGATTCACAACCTTTTCCGCCGCCGCCCGGGATTCGACTCTTGTCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTAGCATTTGCCACGTTTTACA
ATCACCAATCAGCTGTGACGGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAA
CATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAGAACCGACTCCAATGCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATC
AAAAAGGACCGAACAAAGCAATGAGGCTGTGGTGACTCCTGGTCCTCGTAATGCTTTATCGGCTCCATATGAGCATCACGAAAAGAATGATGGTGGACCATGCTCCACTT
TGTTTATCGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTCAACGTGCTCAAACTGCGTGCCAAAAGTGGAATGCCG
GTTGCATTTGCTGATTTTGAGGAAATTGAACAAGCTAGCAAGGTTATGGAGGAACTTCAAGGCAGCATGCTACCATCATCAGACCGTGGTGGCATGCATATAGAGGACTC
ATTTGCTGCCCCTCTGAAGTTTTATGGCATTCATCAGTCTGGTATCGCTTCAAGTGCTTGCAAACTACACATCACATCACTGCCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCACCAGCCTTACGATCCTTACTATCTCTATCATCAACCGGACCCTAACTACAGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGATGT
CAAGCCTCGCGAGATTCACAACCTTTTCCGCCGCCGCCCGGGATTCGACTCTTGTCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTAGCATTTGCCACGTTTTACA
ATCACCAATCAGCTGTGACGGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAA
CATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAGAACCGACTCCAATGCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATC
AAAAAGGACCGAACAAAGCAATGAGGCTGTGGTGACTCCTGGTCCTCGTAATGCTTTATCGGCTCCATATGAGCATCACGAAAAGAATGATGGTGGACCATGCTCCACTT
TGTTTATCGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTCAACGTGCTCAAACTGCGTGCCAAAAGTGGAATGCCG
GTTGCATTTGCTGATTTTGAGGAAATTGAACAAGCTAGCAAGGTTATGGAGGAACTTCAAGGCAGCATGCTACCATCATCAGACCGTGGTGGCATGCATATAGAGGACTC
ATTTGCTGCCCCTCTGAAGTTTTATGGCATTCATCAGTCTGGTATCGCTTCAAGTGCTTGCAAACTACACATCACATCACTGCCTAAATAA
Protein sequenceShow/hide protein sequence
MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRK
HKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMP
VAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEDSFAAPLKFYGIHQSGIASSACKLHITSLPK