CuGenDBv2

Gene ID	Lag0003118
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase I subunit rpa49-like
Genome location	chr4:48205290..48207934
RNA-Seq Expression	Lag0003118
Synteny	Lag0003118
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7025877.1 DNA-directed RNA polymerase I subunit rpa49 [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-219

90.43

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA DS+ F  EETHY EPEANSQ PA KKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EE VEEQNSVRA+VYRHK KPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPE ESPSVANDELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKK+CCI+SYITHL+KYKDQHSMDGVSS KGHKIPSMLRQKFSSMFST ESRRLSAEKTDLLISHVLVL LFADEFSSDPSDIA+DLRTSPF
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLP+PLQFPELR+KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

XP_022151610.1 DNA-directed RNA polymerase I subunit rpa49 [Momordica charantia]

1.1e-218

89.75

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA D++SFELEETHY EPEANSQSPAKK +KSEKKKKRV  V A IQVLSNHPEKTPPLVGYFPSGF+PHKDADEEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV EKESP+V +DELSVQEKADRMRELTNLYGTKRSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKLHSLKQ DD DT+KDLD KMKNVVVNKEALE TNA+IARNIPTYNASATTPQEAYPLDKIIL GEWS+LED+Y LL+ EAEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKK+CCIFSYITHLIK+KDQ+SMDGVSSAKGHKIPSMLRQKFSSMFS +ESRRLS EK+DLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLRLHFDNLGCKFIRKNNLSLVTLP+PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

XP_022964095.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita moschata]

1.8e-221

90.89

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA DS+ F  EETHY EPEANSQSPAKKKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EE VEEQNSVRA+VYRHK KPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPE ESPSVANDELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS KGHKIPSMLRQKFSSMFST ESRRLSAEKTDLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLP+PLQFPELR+KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

XP_023000003.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

1.9e-218

90.21

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA DS+ F  EETHY  PEANSQSP  KKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EEAVEEQNSVRA+VYRHK KPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        +VSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKV GSDVPE ESPSVANDELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS +GHKIPSMLRQKFSSMFST ESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIA+DLRTSPF
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLR+H+DNLGCKFIRKNNLS VTLP+PLQFPELRQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

XP_023514670.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

6.2e-222

91.12

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA DS+ F  EETHY EPEANSQSPAKKKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EEAVEEQNSVRA+VYRHK KPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTG NVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPE ESPSVANDELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYP+FVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS KGHKIPSMLRQKFSSMFST ESRRLSAEKTDLLISHVLVL LFADEFSSDPSDIA+DLRTSPF
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLP+PLQFPELRQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DBN9 DNA-directed RNA polymerase I subunit rpa49

5.3e-219

89.75

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA D++SFELEETHY EPEANSQSPAKK +KSEKKKKRV  V A IQVLSNHPEKTPPLVGYFPSGF+PHKDADEEAV+EQ S+RARVYR+KNKPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIA+NMIFRLDPKVRGSDV EKESP+V +DELSVQEKADRMRELTNLYGTKRSIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKLHSLKQ DD DT+KDLD KMKNVVVNKEALE TNA+IARNIPTYNASATTPQEAYPLDKIIL GEWS+LED+Y LL+ EAEISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKK+CCIFSYITHLIK+KDQ+SMDGVSSAKGHKIPSMLRQKFSSMFS +ESRRLS EK+DLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLRLHFDNLGCKFIRKNNLSLVTLP+PL+FP+L  KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

3.3e-213

87.47

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MAED++SFELE+ HY+EP++N QSPAKKKKKSEKKKKRVP V AKIQVLSNHP+KTPPLV YFPSGFDPHKD +EEAVEEQ+SVRARVYRHKNKPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV E ESPSV N+ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDPDTKKDLD KMKNVVVNKEALEST AQIARNIPTYN SATTP+EAYPLDKIILKGEWS+LEDLY LLQEEAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDVQDEEEKK++C IFSYITHLIKYKDQHSM  V+SAK HK PSM+RQKFSSMF T E+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FPELRQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

A0A6J1HM51 DNA-directed RNA polymerase I subunit rpa49-like

8.8e-222

90.89

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA DS+ F  EETHY EPEANSQSPAKKKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EE VEEQNSVRA+VYRHK KPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPE ESPSVANDELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS KGHKIPSMLRQKFSSMFST ESRRLSAEKTDLLISHVLVL LF DEFSSDPSDIA+DLRTSPF
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLR+H+DNLGCKFIRKNNLSLVTLP+PLQFPELR+KRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

8.0e-215

88.15

Show/hide

Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MAED++SFELE+ HY+EP+ANSQSPAKKKKKSEKKKKRVP V AKIQVLSNHP+KTPPLV YFPSGFDPHKDA+EEAVEEQ+SVRARVYRHKNKPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV E ES SV N+ELSVQEKA++MRELTNLYGTK+SI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKLHSLKQEDDPDTKKDLD KMKNVVVNKEALEST AQIARNIPTYN SATTP+EAYPLDKIILKGEWSFLED+Y LLQEEAEISA YPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QDVQDEEEKK++C IFSYITHLIKYKDQHSM  V+SAK HK PSM+RQKFSSMF T E+RRLS E  +LLISHVLVLTLFADEFSSDPSDIAKDLRTSP+
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
         LRLHFDNLGCKFIRKNNLSLVTLP PL+FPELRQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

A0A6J1KIP6 DNA-directed RNA polymerase I subunit rpa49-like

9.1e-219

90.21

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Query:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL
        MA DS+ F  EETHY  PEANSQSP  KKKKSEKKKKRVPPV  KIQVLSNHPEK PPLVGYFPSG+DP+KD +EEAVEEQNSVRA+VYRHK KPNRMQL
Subjt:  MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ
        +VSPTGSNVDFVGTNYLGEATAGKQHC+YALGVLDKATQSLKIVPIASNMIFRLDPKV GSDVPE ESPSVANDELSVQEKADRMREL+NLYGTK+SIKQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQ

Query:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLD KMKNVVVNKEALES+NAQI+RNIPTYNASATTPQEAYPLDKIILKGEW FLEDLYFLLQ E+EISANYPSFVRNRIYKL
Subjt:  AKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKL

Query:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF
        QD+QDEEEKKK+CCI+SYITHLIKYKDQHSMDGVSS +GHKIPSMLRQKFSSMFST ESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIA+DLRTSPF
Subjt:  QDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPF

Query:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR
        TLR+H+DNLGCKFIRKNNLS VTLP+PLQFPELRQKRRR
Subjt:  TLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

8.1e-07

25.17

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Query:  KKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQH
        K KK+  +        + KI  LS      PPLV    SGF P             + R ++ +  N+ NR   ++  T   V F   N   ++TA  + 
Subjt:  KKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQH

Query:  CTYALGVLDKATQSLKIVPIA-SNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIK--QAKKLHSLKQEDDPDTKKDLDVKM
          Y L V DK  +  KIVP    N   R    ++  D   K+     +  +  Q        L   +GT++S K    +  + +K E   D K  L   +
Subjt:  CTYALGVLDKATQSLKIVPIA-SNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIK--QAKKLHSLKQEDDPDTKKDLDVKM

Query:  KNVVVNKEALESTNAQIA------RNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAE------ISANYPSFVRNRIYKLQDVQDEEEKKK
         NV    EAL  T   IA      R IP  N  A + ++AY L+ II K E+S +  +  LL+   E      +   +  F+  R  +L  +++ ++K+ 
Subjt:  KNVVVNKEALESTNAQIA------RNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAE------ISANYPSFVRNRIYKLQDVQDEEEKKK

Query:  ICCIFSYITHLIKYKDQHSMDGVSSAKGHKI---PSMLRQKFSSMFST---MESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLH
           I  YI+ L  +       G       K+   P +L       F+    + S ++S+ + D +I ++LVL L  D +S+D   +A DL          
Subjt:  ICCIFSYITHLIKYKDQHSMDGVSSAKGHKI---PSMLRQKFSSMFST---MESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLH

Query:  FDNLGCKFIR---------------KNNLSLVTLPIPLQFPELRQKRRR
        F  +GC+ +                  N     L IPL+FP+ R+ R R
Subjt:  FDNLGCKFIR---------------KNNLSLVTLPIPLQFPELRQKRRR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

3.0e-97

44.12

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Query:  EDSRSFELEETHYTEPEANSQSPAKKKK---KSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHK-NKPNRM
        E+   +  EE  +  P+   +   K KK   ++E + +    VT K+  ++  P++  P+V YF +G+DP K   +       + +  VY+HK +   R+
Subjt:  EDSRSFELEETHYTEPEANSQSPAKKKK---KSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHK-NKPNRM

Query:  QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKE-SPSVANDELSVQEKADRMRELTNLYGTKRS
        Q+VVSP G+ V+FVGTNY GE  A  Q  TY +GV ++  ++L+I+P+A N I RL+P+V+  +  E+E S S    EL   +  +R R     Y TK++
Subjt:  QLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKE-SPSVANDELSVQEKADRMRELTNLYGTKRS

Query:  IKQAKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISAN-YPSFVRNR
        + + KK  +L   DD  T+K LD K+  + VN  ALE T++ +ARNIP YN +ATT  EAYPL+KII KG+WSFLED+Y+LLQ+E E +   YP FVRNR
Subjt:  IKQAKKLHSLKQEDDPDTKKDLDVKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISAN-YPSFVRNR

Query:  IYKLQDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLR
        +Y+L+D++D+ +K+ +C   + +THL+K+KD++SM+G  SAK HK+P + RQKF+SMF   ES R+  +K +LLIS+VLVL+L  D F +DP DIAKDLR
Subjt:  IYKLQDVQDEEEKKKICCIFSYITHLIKYKDQHSMDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLR

Query:  TSPFTLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRR
         S   LR HF  LGCKF+++N+ ++ TLP PL FPE+ ++RR
Subjt:  TSPFTLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGGAAGATTCTAGATCTTTTGAATTGGAAGAAACTCATTACACAGAACCAGAAGCAAATTCACAGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAA
GCGAGTTCCACCAGTGACTGCCAAAATCCAAGTCCTTAGCAACCATCCAGAGAAAACTCCGCCACTAGTTGGTTATTTCCCATCTGGGTTTGATCCTCACAAGGATGCTG
ATGAGGAAGCAGTTGAGGAGCAGAATTCTGTGAGGGCTAGGGTTTACAGGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTTAGTCCAACAGGGTCAAATGTGGAT
TTTGTTGGCACCAATTATTTGGGCGAGGCTACTGCCGGGAAACAGCATTGCACCTATGCTCTTGGTGTTCTTGATAAGGCGACCCAAAGCTTAAAGATTGTGCCTATTGC
TTCAAATATGATATTTAGATTGGATCCAAAAGTCAGAGGTTCAGATGTTCCTGAAAAGGAATCCCCAAGTGTGGCAAATGACGAACTTTCTGTGCAGGAGAAAGCTGATA
GAATGAGAGAGCTGACCAATCTCTATGGAACAAAGAGGTCAATAAAGCAGGCAAAGAAGCTGCATTCTTTGAAGCAAGAGGATGATCCCGATACCAAGAAGGATCTGGAT
GTGAAAATGAAAAATGTAGTTGTAAATAAAGAGGCCTTGGAAAGTACAAATGCACAAATTGCTCGCAATATACCAACATATAATGCTTCTGCAACTACTCCACAAGAAGC
TTACCCACTCGACAAGATTATCCTCAAGGGAGAATGGAGTTTCCTGGAAGATCTTTATTTCCTTTTGCAAGAAGAAGCTGAAATAAGTGCAAATTATCCATCCTTTGTCC
GCAACAGAATTTATAAATTGCAAGACGTTCAGGACGAGGAAGAGAAGAAGAAGATCTGCTGCATATTTTCATACATCACGCATCTAATTAAGTACAAGGACCAGCATTCT
ATGGATGGTGTTTCTTCTGCAAAGGGCCACAAAATCCCTAGCATGCTACGCCAAAAGTTCTCATCCATGTTTTCGACTATGGAGTCGAGAAGACTGTCAGCAGAGAAAAC
CGATCTTCTCATTAGCCACGTGTTGGTGCTTACGCTATTTGCCGATGAATTCAGCAGCGATCCATCAGACATAGCGAAGGATCTCAGAACTAGCCCTTTCACTCTAAGAC
TCCATTTTGATAATCTGGGTTGCAAGTTCATACGCAAGAACAACTTGTCGTTGGTTACGCTTCCCATCCCGCTTCAATTTCCAGAGTTGAGGCAAAAGAGACGACGATAA

mRNA sequence

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Protein sequence

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MAEDSRSFELEETHYTEPEANSQSPAKKKKKSEKKKKRVPPVTAKIQVLSNHPEKTPPLVGYFPSGFDPHKDADEEAVEEQNSVRARVYRHKNKPNRMQLVVSPTGSNVD
FVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVPEKESPSVANDELSVQEKADRMRELTNLYGTKRSIKQAKKLHSLKQEDDPDTKKDLD
VKMKNVVVNKEALESTNAQIARNIPTYNASATTPQEAYPLDKIILKGEWSFLEDLYFLLQEEAEISANYPSFVRNRIYKLQDVQDEEEKKKICCIFSYITHLIKYKDQHS
MDGVSSAKGHKIPSMLRQKFSSMFSTMESRRLSAEKTDLLISHVLVLTLFADEFSSDPSDIAKDLRTSPFTLRLHFDNLGCKFIRKNNLSLVTLPIPLQFPELRQKRRR

Lag0003118 (gene) of Sponge gourd (AG-4) v1 genome