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Lag0003159 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0003159
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description50S ribosomal protein L12, chloroplastic-like
Genome locationchr4:48574543..48574893
RNA-Seq ExpressionLag0003159
SyntenyLag0003159
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000206 - Ribosomal protein L7/L12
IPR008932 - Ribosomal protein L7/L12, oligomerisation
IPR036235 - Ribosomal protein L7/L12, oligomerisation domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588957.1 50S ribosomal protein L12-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.5e-2972.95Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV
        MASTLSTASL+ PSCSSSSFPS  SHSPK  SL+FP S SS+NLSLRL+HL PLSATAVPEKV  +GD ISKLTL EARILVDYLQ+KLGVS      A 
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV

Query:  VAVAPGIAVGEDVAATAVSRNT
        V VAPG A GED AA AV   T
Subjt:  VAVAPGIAVGEDVAATAVSRNT

KAG7022725.1 50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-2972.13Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV
        MASTLSTASL+ PSCSSSSFPS  SHSPK  SL+FP S SS+NLSLRL+HL PLSATAVPEKV  +GD ISKLTL EAR+LVDYLQ+KLGVS      A 
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV

Query:  VAVAPGIAVGEDVAATAVSRNT
        V VAPG A GED AA AV   T
Subjt:  VAVAPGIAVGEDVAATAVSRNT

XP_004141094.1 50S ribosomal protein L12, chloroplastic [Cucumis sativus]5.6e-2970.49Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVSAV------
        M+STLSTASLRSPS SSSS+PSN SHS KPT L FPFSF+ TNLSLRLIH  P+SA AVPEKV+ +GD ISKLTL EAR LVDYLQEKLGVSA       
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVSAV------

Query:  VAVAPGIAVGEDVAATAVSRNT
          VAPG A G D AA AV   T
Subjt:  VAVAPGIAVGEDVAATAVSRNT

XP_022152130.1 50S ribosomal protein L12, chloroplastic-like [Momordica charantia]1.7e-3072.13Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV
        MASTLSTASLRSPSCSSSS+PSN S SP+P SL+FPFS SS NLS RL+HL P+SA A PEKV  +GD ISKLTL EARILVDYLQEKLGVS      A 
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV

Query:  VAVAPGIAVGEDVAATAVSRNT
        VAVAPG   G DVAA AV   T
Subjt:  VAVAPGIAVGEDVAATAVSRNT

XP_038903222.1 50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]1.0e-3072.95Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV
        M+STLSTASLRSPS S SS+PSN SHS KPT LNFPFSFSSTNLSLRL+H  P+SA AVPEKV+ +GD IS+LTL EAR LVDYLQEKLGVS      AV
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV

Query:  VAVAPGIAVGEDVAATAVSRNT
        VAVAPG A G D AA AV   T
Subjt:  VAVAPGIAVGEDVAATAVSRNT

TrEMBL top hitse value%identityAlignment
A0A0A0LHZ4 Ribosomal protein L12-C2.7e-2970.49Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVSAV------
        M+STLSTASLRSPS SSSS+PSN SHS KPT L FPFSF+ TNLSLRLIH  P+SA AVPEKV+ +GD ISKLTL EAR LVDYLQEKLGVSA       
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVSAV------

Query:  VAVAPGIAVGEDVAATAVSRNT
          VAPG A G D AA AV   T
Subjt:  VAVAPGIAVGEDVAATAVSRNT

A0A5A7UJJ4 50S ribosomal protein L121.0e-2870.97Show/hide
Query:  MASTLSTASLR--SPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------
        M+STLSTASLR  SPS SSSS+PSN SHS KPT L FPFSF+ TNLSLRLIH  P+SA AVPEKV+ +GD ISKLTL EAR LVDYLQEKLGVS      
Subjt:  MASTLSTASLR--SPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------

Query:  AVVAVAPGIAVGEDVAATAVSRNT
        A VAVAPG A G D AA AV   T
Subjt:  AVVAVAPGIAVGEDVAATAVSRNT

A0A6J1DD25 50S ribosomal protein L12, chloroplastic-like8.4e-3172.13Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV
        MASTLSTASLRSPSCSSSS+PSN S SP+P SL+FPFS SS NLS RL+HL P+SA A PEKV  +GD ISKLTL EARILVDYLQEKLGVS      A 
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV

Query:  VAVAPGIAVGEDVAATAVSRNT
        VAVAPG   G DVAA AV   T
Subjt:  VAVAPGIAVGEDVAATAVSRNT

A0A6J1EK20 50S ribosomal protein L12, chloroplastic-like3.5e-2972.13Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV
        MASTLSTA L+ PSCSSSSFPS  SHSPK  SL+FP S SS+NLSLRL+HL PLSATAVPEKV  +GD ISKLTL EARILVDYLQ+KLGVS      A 
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV

Query:  VAVAPGIAVGEDVAATAVSRNT
        V VAPG A GED AA AV   T
Subjt:  VAVAPGIAVGEDVAATAVSRNT

A0A6J1JLN3 50S ribosomal protein L12, chloroplastic-like6.0e-2972.13Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV
        MASTLSTASL+ PSCSSSSFPS  SHSPK  SL+FP S SS+NLSLRL+HL PLSATAVPEKV  +GD ISKLTL EARILVDYLQ+KLGVS      A 
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV

Query:  VAVAPGIAVGEDVAATAVSRNT
        VAVA G A G+D AA AV   T
Subjt:  VAVAPGIAVGEDVAATAVSRNT

SwissProt top hitse value%identityAlignment
P02398 50S ribosomal protein L12, chloroplastic4.6e-1045.28Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSL---RLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVSAVVAV
        MA+T + A+L  PS   +S P++S+    P  L FPF  ++  +SL   R   L P++A   PEK+  LG  +S LTL EAR+LVD+LQ+KLGVSA  + 
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSL---RLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVSAVVAV

Query:  APGIAV
        AP  AV
Subjt:  APGIAV

P24929 50S ribosomal protein L12, chloroplastic1.2e-1050Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV
        MASTLST +LRSPS S++S    S   PK  +L FP      +   R   L PL+A   PEKV  LGD+IS LTL +A+ LV+YLQ+KLGV+      A 
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV

Query:  VAVAPGIA
        VA APG A
Subjt:  VAVAPGIA

P36211 50S ribosomal protein L12-2, chloroplastic1.6e-1043.55Show/hide
Query:  ASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSF---SSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------
        A+TLS A+    S  SS   S      +P S+ FPFSF   SS+ LS R I+L P+SA   P+K+  +G +IS LTL E+RILVDY+Q+K GVS      
Subjt:  ASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSF---SSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------

Query:  AVVAVAPGIAVGEDVAATAVSRNT
        A  A+ P +  G   A  +V R T
Subjt:  AVVAVAPGIAVGEDVAATAVSRNT

P36212 50S ribosomal protein L12-3, chloroplastic1.4e-1148.28Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHS--PKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS--AVVA
        MAST  T S+ +   SSS   S S+H    KPT++ FPF  SS++ S R I+L P+SA   PEK+  +G +IS LTL EARILVDYLQ+K GVS  ++  
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHS--PKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS--AVVA

Query:  VAPGIAVGEDVAATAV
         A  +A   D  A AV
Subjt:  VAPGIAVGEDVAATAV

P36688 50S ribosomal protein L12, chloroplastic1.6e-1049.07Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV
        MASTLST +LRSPS S+++    S   PK T L FP        + R   L PL+A   PEKV  LGD+IS LTL +A+ LV+YLQ+KLGV+      A 
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------AV

Query:  VAVAPGIA
        V  APG A
Subjt:  VAVAPGIA

Arabidopsis top hitse value%identityAlignment
AT3G27830.1 ribosomal protein L12-A1.6e-1043.7Show/hide
Query:  ASTLSTASLRSPSCSSSSFPSNSS--HSP-KPTSLNFPFSF---SSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS--A
        ++TLS A+    +  SSS+P+ +S  H P + T++ FP  F   SS+ L+ R  HL P++A   PEK+  +G +IS LTL EARILVDYLQ+K GVS  +
Subjt:  ASTLSTASLRSPSCSSSSFPSNSS--HSP-KPTSLNFPFSF---SSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS--A

Query:  VVAVAPGIAVGEDVAATAV
        +   A  +A   D  A AV
Subjt:  VVAVAPGIAVGEDVAATAV

AT3G27840.1 ribosomal protein L12-B1.1e-1143.55Show/hide
Query:  ASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSF---SSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------
        A+TLS A+    S  SS   S      +P S+ FPFSF   SS+ LS R I+L P+SA   P+K+  +G +IS LTL E+RILVDY+Q+K GVS      
Subjt:  ASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSF---SSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS------

Query:  AVVAVAPGIAVGEDVAATAVSRNT
        A  A+ P +  G   A  +V R T
Subjt:  AVVAVAPGIAVGEDVAATAVSRNT

AT3G27850.1 ribosomal protein L12-C1.0e-1248.28Show/hide
Query:  MASTLSTASLRSPSCSSSSFPSNSSHS--PKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS--AVVA
        MAST  T S+ +   SSS   S S+H    KPT++ FPF  SS++ S R I+L P+SA   PEK+  +G +IS LTL EARILVDYLQ+K GVS  ++  
Subjt:  MASTLSTASLRSPSCSSSSFPSNSSHS--PKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVS--AVVA

Query:  VAPGIAVGEDVAATAV
         A  +A   D  A AV
Subjt:  VAPGIAVGEDVAATAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTCTCTCCACCGCTTCTCTCCGATCCCCATCTTGTTCTTCATCCTCTTTCCCCTCAAATTCCTCCCATTCCCCAAAACCCACTTCCCTCAATTTCCCCTT
TTCATTCTCCTCCACCAATCTCTCTCTCCGCCTTATTCATCTCTGCCCACTCTCCGCCACCGCTGTGCCGGAGAAAGTTGCAGGACTCGGCGATGACATCTCCAAATTGA
CGCTCGGAGAGGCACGAATCCTCGTCGATTACCTCCAAGAGAAGCTCGGCGTTTCCGCCGTTGTTGCCGTCGCGCCCGGCATCGCTGTCGGGGAAGACGTTGCGGCCACC
GCCGTCTCGAGAAACACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACTCTCTCCACCGCTTCTCTCCGATCCCCATCTTGTTCTTCATCCTCTTTCCCCTCAAATTCCTCCCATTCCCCAAAACCCACTTCCCTCAATTTCCCCTT
TTCATTCTCCTCCACCAATCTCTCTCTCCGCCTTATTCATCTCTGCCCACTCTCCGCCACCGCTGTGCCGGAGAAAGTTGCAGGACTCGGCGATGACATCTCCAAATTGA
CGCTCGGAGAGGCACGAATCCTCGTCGATTACCTCCAAGAGAAGCTCGGCGTTTCCGCCGTTGTTGCCGTCGCGCCCGGCATCGCTGTCGGGGAAGACGTTGCGGCCACC
GCCGTCTCGAGAAACACTTGA
Protein sequenceShow/hide protein sequence
MASTLSTASLRSPSCSSSSFPSNSSHSPKPTSLNFPFSFSSTNLSLRLIHLCPLSATAVPEKVAGLGDDISKLTLGEARILVDYLQEKLGVSAVVAVAPGIAVGEDVAAT
AVSRNT