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Lag0003219 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0003219
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr4:49118412..49123103
RNA-Seq ExpressionLag0003219
SyntenyLag0003219
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7024597.1 unnamed protein product [Microthlaspi erraticum]8.7e-0748.33Show/hide
Query:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV
        +DD++  C++ +K+C T+ RIL TYEEASGQ IN+ KSS+  +K    +  EK  EILG+
Subjt:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV

PNX92542.1 ribonuclease H [Trifolium pratense]1.5e-0632.2Show/hide
Query:  VTRRSDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGVFIFRPKTDRTDVGRSVSRPSRSVSVLRLRRTRGLTV
        +T   DD  + C A   +   + RILHTYE+ASGQ IN+ KS +  S+N+     E LS ILGV        R  +GR++S+  + V +  +       +
Subjt:  VTRRSDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGVFIFRPKTDRTDVGRSVSRPSRSVSVLRLRRTRGLTV

Query:  KAVKSFIISNELQGKRVH
        +A+ S+++     G+ +H
Subjt:  KAVKSFIISNELQGKRVH

XP_018475243.1 PREDICTED: uncharacterized protein LOC108846507 [Raphanus sativus]2.5e-0655.93Show/hide
Query:  DDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV
        DDSLIL RA E  CM I+R+L  YEE SGQ IN+ KSS+   KNI   +  K+ EILG+
Subjt:  DDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV

XP_021838584.1 uncharacterized protein LOC110778326 [Spinacia oleracea]6.7e-0750Show/hide
Query:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV
        +DDS+I CRA+ +D   +KR+L  YEEASGQ INM+KS +  S N+ +++  +L+E LGV
Subjt:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV

XP_033143372.1 uncharacterized protein LOC117132671 [Brassica rapa]3.9e-0735.16Show/hide
Query:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGVFIFRPKTDRTDVGRSVSRPSRSVSVLRLRRT
        +DDSL LC+A+E+ C+ +K IL  YE A+GQ IN+EKSS+   K + +++ +++ EI G++      D      +++ P  ++S  +L +T
Subjt:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGVFIFRPKTDRTDVGRSVSRPSRSVSVLRLRRT

TrEMBL top hitse value%identityAlignment
A0A2K3MP39 Ribonuclease H7.2e-0732.2Show/hide
Query:  VTRRSDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGVFIFRPKTDRTDVGRSVSRPSRSVSVLRLRRTRGLTV
        +T   DD  + C A   +   + RILHTYE+ASGQ IN+ KS +  S+N+     E LS ILGV        R  +GR++S+  + V +  +       +
Subjt:  VTRRSDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGVFIFRPKTDRTDVGRSVSRPSRSVSVLRLRRTRGLTV

Query:  KAVKSFIISNELQGKRVH
        +A+ S+++     G+ +H
Subjt:  KAVKSFIISNELQGKRVH

A0A2N9ESR2 Uncharacterized protein7.2e-0750Show/hide
Query:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV
        +DDSL+ CRA  ++C  I+ IL  YE+ASGQ +N EK++L  S+N P+   E+L +ILGV
Subjt:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV

A0A2N9FNT0 RNase H domain-containing protein1.4e-0753.33Show/hide
Query:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV
        +DDSL+ CRA   +C  I+ IL TYE+ASGQ +N  K++L  SKN P+ K E++ EILGV
Subjt:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV

A0A2N9GFR8 RNase H domain-containing protein3.2e-0753.33Show/hide
Query:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV
        SDDSL+ CRA   +C  I+ IL  YE+ASGQ +N  K++L  SKN P+ K E++ EILGV
Subjt:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV

A0A6D2I7R7 Reverse transcriptase domain-containing protein4.2e-0748.33Show/hide
Query:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV
        +DD++  C++ +K+C T+ RIL TYEEASGQ IN+ KSS+  +K    +  EK  EILG+
Subjt:  SDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEKSSLMTSKNIPRDKAEKLSEILGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATACTCCTAGGGCGTGCCCCAATGGCGTCTATTCATCGAAAAGTCCTTGTAGGAGTGACAATGCCTATACTCCTAGGGCGCGCCCCGTGGCATCTACTCATCAA
AATTCCTTGTAGGAGTGGCAACACCTATACTCCTAGGGCGCTCCCCGAGTTGCTTTGCAGGCCACGTCTTCCCCATTCAAATAAATTTACCGTTGATGTCACGAGAAGGT
CAGACGACAGCTTAATATTGTGCAGAGCAGAAGAAAAGGATTGCATGACAATAAAGAGAATCCTACATACCTACGAAGAAGCCTCGGGACAAACGATCAACATGGAAAAA
TCATCCCTAATGACAAGCAAAAATATTCCTAGAGACAAAGCGGAAAAGCTAAGTGAGATCCTGGGGGTGTTCATCTTCAGACCGAAAACCGACCGAACCGACGTCGGTCG
GTCGGTTAGCCGACCAAGTCGGTCGGTGTCGGTTCTTAGATTGAGGAGGACCCGTGGCTTGACAGTGAAGGCAGTAAAATCCTTTATAATTAGCAACGAGCTACAAGGGA
AGAGAGTCCATGAGGTTATAGATGATCAGGGGAACTGGATAGCTGGAAAAATCTTGGAAAACTTCACCACCTTAGATGCTGAAACAATTTTAACACCCCAGTTGGAGGAA
GATACGAGTCCCAGCAGCGAGGCGCAAGGCCGAGTTAAAGACCCTCACGAGTCAAGTGAGATGGATACCACTGCCGATCAACAAAAATTGGCCAATAAAATTCATGGAAA
TGAAGGCGATTTTAGAAGGATTGAAGAACATACCTTCAACTGGCCTTGTGAATGGCAACCTGCCTCTGTTCCCATCTTCGTAGAATCTGACGCCTCAAATGTAGTTAAGA
TACTTAATGGCAAAGATGAGGATATCTCGGAGATCTCATTCCTTACCGAAGAGATAAGTCGCTTGAAGAATCGATTTCAAGAGATTCATTTCGACTACTGCCCAAGAGAA
CAAAACGCAACTGCGATCGTCTGGCGCGTTTCTCTGTTTCTTCCCCCATGTATTATGTTTTGGACTCCCCTGCGCTGGTGGAACGATAATGGGCTTCTGGCGGGGGTATC
CCCCTTTGGATTAGAAACCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATACTCCTAGGGCGTGCCCCAATGGCGTCTATTCATCGAAAAGTCCTTGTAGGAGTGACAATGCCTATACTCCTAGGGCGCGCCCCGTGGCATCTACTCATCAA
AATTCCTTGTAGGAGTGGCAACACCTATACTCCTAGGGCGCTCCCCGAGTTGCTTTGCAGGCCACGTCTTCCCCATTCAAATAAATTTACCGTTGATGTCACGAGAAGGT
CAGACGACAGCTTAATATTGTGCAGAGCAGAAGAAAAGGATTGCATGACAATAAAGAGAATCCTACATACCTACGAAGAAGCCTCGGGACAAACGATCAACATGGAAAAA
TCATCCCTAATGACAAGCAAAAATATTCCTAGAGACAAAGCGGAAAAGCTAAGTGAGATCCTGGGGGTGTTCATCTTCAGACCGAAAACCGACCGAACCGACGTCGGTCG
GTCGGTTAGCCGACCAAGTCGGTCGGTGTCGGTTCTTAGATTGAGGAGGACCCGTGGCTTGACAGTGAAGGCAGTAAAATCCTTTATAATTAGCAACGAGCTACAAGGGA
AGAGAGTCCATGAGGTTATAGATGATCAGGGGAACTGGATAGCTGGAAAAATCTTGGAAAACTTCACCACCTTAGATGCTGAAACAATTTTAACACCCCAGTTGGAGGAA
GATACGAGTCCCAGCAGCGAGGCGCAAGGCCGAGTTAAAGACCCTCACGAGTCAAGTGAGATGGATACCACTGCCGATCAACAAAAATTGGCCAATAAAATTCATGGAAA
TGAAGGCGATTTTAGAAGGATTGAAGAACATACCTTCAACTGGCCTTGTGAATGGCAACCTGCCTCTGTTCCCATCTTCGTAGAATCTGACGCCTCAAATGTAGTTAAGA
TACTTAATGGCAAAGATGAGGATATCTCGGAGATCTCATTCCTTACCGAAGAGATAAGTCGCTTGAAGAATCGATTTCAAGAGATTCATTTCGACTACTGCCCAAGAGAA
CAAAACGCAACTGCGATCGTCTGGCGCGTTTCTCTGTTTCTTCCCCCATGTATTATGTTTTGGACTCCCCTGCGCTGGTGGAACGATAATGGGCTTCTGGCGGGGGTATC
CCCCTTTGGATTAGAAACCTCTTAA
Protein sequenceShow/hide protein sequence
MPILLGRAPMASIHRKVLVGVTMPILLGRAPWHLLIKIPCRSGNTYTPRALPELLCRPRLPHSNKFTVDVTRRSDDSLILCRAEEKDCMTIKRILHTYEEASGQTINMEK
SSLMTSKNIPRDKAEKLSEILGVFIFRPKTDRTDVGRSVSRPSRSVSVLRLRRTRGLTVKAVKSFIISNELQGKRVHEVIDDQGNWIAGKILENFTTLDAETILTPQLEE
DTSPSSEAQGRVKDPHESSEMDTTADQQKLANKIHGNEGDFRRIEEHTFNWPCEWQPASVPIFVESDASNVVKILNGKDEDISEISFLTEEISRLKNRFQEIHFDYCPRE
QNATAIVWRVSLFLPPCIMFWTPLRWWNDNGLLAGVSPFGLETS