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Lag0003262 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0003262
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationScvUqRz_168_HRSCAF_332:38107..38649
RNA-Seq ExpressionLag0003262
SyntenyLag0003262
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7053510.1 unnamed protein product [Microthlaspi erraticum]4.2e-1163.08Show/hide
Query:  IPYDIEQRC----SIRSQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL
        IP   + RC    ++R+   KLSSTVLREGI  PIPT ENRPF++EILK RRLGS+KP SIGN+L
Subjt:  IPYDIEQRC----SIRSQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL

KAG9438766.1 hypothetical protein H6P81_021304 [Aristolochia fimbriata]2.6e-0882.22Show/hide
Query:  KLSSTVLREG-IYLPIPTGENRPFDREILKLRRLGSIKPLSIGNK
        KLSSTVLREG    PIPTGENRPFDR ILKLRRLG IK L+IGNK
Subjt:  KLSSTVLREG-IYLPIPTGENRPFDREILKLRRLGSIKPLSIGNK

TXG60899.1 hypothetical protein EZV62_012262 [Acer yangbiense]2.4e-1469.12Show/hide
Query:  YVIGWIPYDIEQRCSIR--SQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL
        Y I WI   I++  +++  S+  KLSSTVLR+GI  PIPTGENRPFDREILKLRRLGSIKP SIGNKL
Subjt:  YVIGWIPYDIEQRCSIR--SQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL

VVW91421.1 unnamed protein product, partial [Nymphaea colorata]8.5e-1288.89Show/hide
Query:  QKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNK
        +KLSSTVLREGI LPIPTGE RPFDREI KLRRLGSIK LSIGNK
Subjt:  QKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNK

VVW92714.1 unnamed protein product, partial [Nymphaea colorata]8.8e-0987.5Show/hide
Query:  QKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPL
        +KLSSTVLREGI LPIPTGE RPFDREI KLRRLGSIK L
Subjt:  QKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPL

TrEMBL top hitse value%identityAlignment
A0A5A7RKZ7 Cytoplasmic dynein 1 light intermediate chain 11.0e-0761.82Show/hide
Query:  QRCSIRSQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL
        +R S R++    + T   EGI  PIPTGENRPF REILKLR+LG IKPLSIG +L
Subjt:  QRCSIRSQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL

A0A5C7HVZ0 Uncharacterized protein1.2e-1469.12Show/hide
Query:  YVIGWIPYDIEQRCSIR--SQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL
        Y I WI   I++  +++  S+  KLSSTVLR+GI  PIPTGENRPFDREILKLRRLGSIKP SIGNKL
Subjt:  YVIGWIPYDIEQRCSIR--SQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL

A0A5K1HQG0 Uncharacterized protein (Fragment)4.1e-1288.89Show/hide
Query:  QKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNK
        +KLSSTVLREGI LPIPTGE RPFDREI KLRRLGSIK LSIGNK
Subjt:  QKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNK

A0A5K1I553 Uncharacterized protein (Fragment)4.2e-0987.5Show/hide
Query:  QKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPL
        +KLSSTVLREGI LPIPTGE RPFDREI KLRRLGSIK L
Subjt:  QKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPL

A0A6D2K9B3 IU_nuc_hydro domain-containing protein2.0e-1163.08Show/hide
Query:  IPYDIEQRC----SIRSQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL
        IP   + RC    ++R+   KLSSTVLREGI  PIPT ENRPF++EILK RRLGS+KP SIGN+L
Subjt:  IPYDIEQRC----SIRSQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAATCCACTTATGTAATAGGGTGGATCCCCTACGATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGAAACTCTCAAGTACGGTTCTAAGGGAAGGAAT
TTACTTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAATCCACTTATGTAATAGGGTGGATCCCCTACGATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGAAACTCTCAAGTACGGTTCTAAGGGAAGGAAT
TTACTTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAG
Protein sequenceShow/hide protein sequence
MKESTYVIGWIPYDIEQRCSIRSQRQKLSSTVLREGIYLPIPTGENRPFDREILKLRRLGSIKPLSIGNKL