CuGenDBv2

Gene ID	Lag0003266
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Photosystem II reaction center protein J
Genome location	ScvUqRz_168_HRSCAF_332:59204..59976
RNA-Seq Expression	Lag0003266
Synteny	Lag0003266
Gene Ontology terms	GO:0009767 - photosynthetic electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0009539 - photosystem II reaction center (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0020037 - heme binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR002682 - Photosystem II PsbJ IPR006216 - Photosystem II cytochrome b559, conserved site IPR013081 - Photosystem II cytochrome b559, N-terminal IPR037025 - Photosystem II cytochrome b559, alpha subunit superfamily IPR037267 - Photosystem II PsbJ superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF4396260.1 hypothetical protein F8388_019806 [Cannabis sativa]

3.6e-25

56.06

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA----------------------------------------------ARPLDEMGREVGQMAETTGRI
        M GS GERSFADIITSIRYWVIHSITIPSLFI                                                R  DEM R+VGQMA+TTGRI
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA----------------------------------------------ARPLDEMGREVGQMAETTGRI

Query:  PLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        PLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  PLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

KAF4400822.1 hypothetical protein G4B88_004365 [Cannabis sativa]

6.2e-17

39.38

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAA----------------RP-----------------------LDEMGR-------------------
        MSGSTGERS ADIITSIR WVIHSITIPSLFIA                 RP                       LDE  R                   
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAA----------------RP-----------------------LDEMGR-------------------

Query:  -------------------------------------------------EVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
                                                         +VGQMA+TTGRIPLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  -------------------------------------------------EVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

QHN53650.1 photosystem II protein J [Parietaria debilis]

1.8e-16

90.57

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Query:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        ARP DEM R+VGQMA+TTGRIPLWIIGTVTGI VIGLIGIFFYGSYSGLGSSL
Subjt:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

YP_009525200.1 photosystem II protein J [Hodgsonia macrocarpa]

1.8e-16

100

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Query:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        MGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
Subjt:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

YP_009572284.1 photosystem II protein J [Debregeasia orientalis]

1.8e-16

90.57

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Query:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        ARP DEM R+VGQMA+TTGRIPLWIIGTVTGI VIGLIGIFFYGSYSGLGSSL
Subjt:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

TrEMBL top hits

e value

%identity

Alignment

A0A346QNN3 Photosystem II reaction center protein J

8.8e-17

100

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Query:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        MGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
Subjt:  MGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

A0A6B9TR93 Photosystem II reaction center protein J

8.8e-17

90.57

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Query:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        ARP DEM R+VGQMA+TTGRIPLWIIGTVTGI VIGLIGIFFYGSYSGLGSSL
Subjt:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

A0A6B9TRV3 Photosystem II reaction center protein J

8.8e-17

90.57

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Query:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        ARP DEM R+VGQMA+TTGRIPLWIIGTVTGI VIGLIGIFFYGSYSGLGSSL
Subjt:  ARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

A0A7J6HPK4 Cytochrome b559 subunit alpha

1.8e-25

56.06

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA----------------------------------------------ARPLDEMGREVGQMAETTGRI
        M GS GERSFADIITSIRYWVIHSITIPSLFI                                                R  DEM R+VGQMA+TTGRI
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA----------------------------------------------ARPLDEMGREVGQMAETTGRI

Query:  PLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        PLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  PLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

A0A7J6HZU7 Uncharacterized protein

3.0e-17

39.38

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAA----------------RP-----------------------LDEMGR-------------------
        MSGSTGERS ADIITSIR WVIHSITIPSLFIA                 RP                       LDE  R                   
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAA----------------RP-----------------------LDEMGR-------------------

Query:  -------------------------------------------------EVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
                                                         +VGQMA+TTGRIPLWIIGTV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  -------------------------------------------------EVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

SwissProt top hits

e value

%identity

Alignment

A0ZZ49 Photosystem II reaction center protein J

1.3e-14

97.5

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Query:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        MA+TTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

Q09MG4 Photosystem II reaction center protein J

1.3e-14

97.5

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Query:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        MA+TTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

Q14FE3 Photosystem II reaction center protein J

1.3e-14

97.5

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Query:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        MA+TTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

Q2L920 Photosystem II reaction center protein J

1.3e-14

97.5

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Query:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        MA+TTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

Q2QD75 Photosystem II reaction center protein J

1.3e-14

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Query:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        MAETTGRIPLW+IGTVTGIPVIGL+GIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00550.1 photosystem II reaction center protein J

6.9e-14

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Query:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL
        MA+TTGRIPLW+IGTV GI VIGLIGIFFYGSYSGLGSSL
Subjt:  MAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

ATCG00580.1 photosystem II reaction center protein E

2.9e-12

100

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Query:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA
        MSGSTGERSFADIITSIRYWVIHSITIPSLFIA
Subjt:  MSGSTGERSFADIITSIRYWVIHSITIPSLFIA

Sequences

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CDS sequence

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ATGTCTGGAAGCACAGGAGAACGTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATTGCAGCACGACCACT
TGATGAAATGGGGAGGGAAGTGGGACAAATGGCCGAGACTACTGGAAGGATTCCTCTTTGGATAATAGGTACTGTAACTGGTATTCCTGTGATCGGTTTAATCGGTATTT
TCTTTTATGGTTCATATTCTGGATTAGGTTCATCTCTGTAA

mRNA sequence

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Protein sequence

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MSGSTGERSFADIITSIRYWVIHSITIPSLFIAARPLDEMGREVGQMAETTGRIPLWIIGTVTGIPVIGLIGIFFYGSYSGLGSSL

Lag0003266 (gene) of Sponge gourd (AG-4) v1 genome