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Lag0003990 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0003990
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr6:231329..233728
RNA-Seq ExpressionLag0003990
SyntenyLag0003990
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN61757.1 hypothetical protein VITISV_030741 [Vitis vinifera]3.0e-1129.87Show/hide
Query:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI
        +SSEL  +R   + EL  LI  E+I WR+KA+VKW KEGD N+ FF        NR  I  L  +SG ++     I+EEI+ ++ KLY  P G  W++  
Subjt:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI

Query:  GALFHSTMAFYKENLENIADRYAEGGESISLLIPWSPLGVTQGYWFFGIQ-------WWRKEGMDEGGEAHLVR-----------------WEVVSKSKE
        G  +          L  + D  A G   + L +P        G+W   I+        W+K  +  GG   L++                   V +K + 
Subjt:  GALFHSTMAFYKENLENIADRYAEGGESISLLIPWSPLGVTQGYWFFGIQ-------WWRKEGMDEGGEAHLVR-----------------WEVVSKSKE

Query:  LG--------GRGSSIGNLRLRNKALLEKWL
        L         G G     + +RN ALL KWL
Subjt:  LG--------GRGSSIGNLRLRNKALLEKWL

CAN71949.1 hypothetical protein VITISV_010315 [Vitis vinifera]1.2e-1231.31Show/hide
Query:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI
        ++SEL  +R   + EL  LI  E+I WR+K +VKW KEGD N+ FF       +NR  I +L  +SG V+     I ++I+ ++ KLY  P G  W   +
Subjt:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI

Query:  GALFHSTMAFYKENL--------ENIADRYAEGGESISLLIPWS------PLGVTQGYWFFGIQW-WRKEGMDEGGEAHLVRWEVVSKSKELGGRGSSIG
          L  S ++  +  +        E + ++   G E +   + +       P  V          + W   G+ E    HLV W+VV  +K  G  G   G
Subjt:  GALFHSTMAFYKENL--------ENIADRYAEGGESISLLIPWS------PLGVTQGYWFFGIQW-WRKEGMDEGGEAHLVRWEVVSKSKELGGRGSSIG

Query:  NLRLRNKALLEKWL
         + LRN ALL KWL
Subjt:  NLRLRNKALLEKWL

KAG5615789.1 hypothetical protein H5410_015613 [Solanum commersonii]2.3e-1130.36Show/hide
Query:  RWMSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQ---NYRRRCKNRIDLLVKDSGEVMRRDFKIEEEIISFYAKLYPPGLLWKIW
        R ++ +   ++ TL ++L  LI +E+I WR++++  W KEGD NT FF    N  +R  N   LL++  G +++   +I+ EI+ FY KLY   + W+  
Subjt:  RWMSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQ---NYRRRCKNRIDLLVKDSGEVMRRDFKIEEEIISFYAKLYPPGLLWKIW

Query:  IGALFHSTMAFYKENLENIADRYAE-----GGESISLLIPWSPLGVTQG------YW-------------FFGIQWWRKEGMDEGGEAHLVRWEVVSKSK
         G  F +      E +E++   + E     GGE  +L  P + LG+  G       W                I+    +G  E    HLV+W+ V   K
Subjt:  IGALFHSTMAFYKENLENIADRYAE-----GGESISLLIPWSPLGVTQG------YW-------------FFGIQWWRKEGMDEGGEAHLVRWEVVSKSK

Query:  ELGGRGSSIGNLRLRNKALLEKWL
         +GG G  I NL+  + AL  KWL
Subjt:  ELGGRGSSIGNLRLRNKALLEKWL

RVW69329.1 putative ribonuclease H protein [Vitis vinifera]3.0e-1137.59Show/hide
Query:  PSSIEIAEGRERNFGWILIMWKNLFLNAKVKGCRWMSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNY--RRRCKNRIDLLVKD
        P S++    R  +  W +++  N F        R +SS+L  +R   + EL  LI  E+I W++KAK+KW KEGD N+  F     RRR KN I LL  +
Subjt:  PSSIEIAEGRERNFGWILIMWKNLFLNAKVKGCRWMSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNY--RRRCKNRIDLLVKD

Query:  SGEVMRRDFKIEEEIISFYAKLY--PPGLLWKI
         G V+     I EEI+ ++ KLY  PPG  W++
Subjt:  SGEVMRRDFKIEEEIISFYAKLY--PPGLLWKI

RVX04715.1 hypothetical protein CK203_024938 [Vitis vinifera]8.6e-1128.84Show/hide
Query:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI
        ++SEL  +R   + +L  LI  E+I WR+KA+VKW KEGD N+ F        +NR  I LL  + G V+     I +EI+ ++ KLY  PP   W++  
Subjt:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI

Query:  GALFHSTMAFYKENLENIADRYAEGGESISLLIPWSPLGVTQGYWFFGIQWWRKEGMDEGG----------------EAHLVRWEVVSKSKELGGRGSSI
                               EG       + W       G+    +   R  G D+GG                   +  WE + +    GG G   
Subjt:  GALFHSTMAFYKENLENIADRYAEGGESISLLIPWSPLGVTQGYWFFGIQWWRKEGMDEGG----------------EAHLVRWEVVSKSKELGGRGSSI

Query:  GNLRLRNKALLEKWL
        G + LRN ALL KWL
Subjt:  GNLRLRNKALLEKWL

TrEMBL top hitse value%identityAlignment
A0A2N9GJ12 Uncharacterized protein3.2e-1138.71Show/hide
Query:  CRWMSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQ---NYRRRCKNRIDLLVKDSGEVMRRDFKIEEEIISFYAKLYPPGLLWKI
        C  +SS  R  R  + VEL  L H E+ SWR+K++V W KEGD NT +F    N  RR +N +D  V+  G V   +  I E+++SFY  LY    +W+ 
Subjt:  CRWMSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQ---NYRRRCKNRIDLLVKDSGEVMRRDFKIEEEIISFYAKLYPPGLLWKI

Query:  WIGAL-FHSTMAFYKENLENIADR
         +  L FHS  A    ++E   DR
Subjt:  WIGAL-FHSTMAFYKENLENIADR

A0A438GAV6 Putative ribonuclease H protein1.4e-1137.59Show/hide
Query:  PSSIEIAEGRERNFGWILIMWKNLFLNAKVKGCRWMSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNY--RRRCKNRIDLLVKD
        P S++    R  +  W +++  N F        R +SS+L  +R   + EL  LI  E+I W++KAK+KW KEGD N+  F     RRR KN I LL  +
Subjt:  PSSIEIAEGRERNFGWILIMWKNLFLNAKVKGCRWMSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNY--RRRCKNRIDLLVKD

Query:  SGEVMRRDFKIEEEIISFYAKLY--PPGLLWKI
         G V+     I EEI+ ++ KLY  PPG  W++
Subjt:  SGEVMRRDFKIEEEIISFYAKLY--PPGLLWKI

A0A438J6X8 Uncharacterized protein4.2e-1128.84Show/hide
Query:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI
        ++SEL  +R   + +L  LI  E+I WR+KA+VKW KEGD N+ F        +NR  I LL  + G V+     I +EI+ ++ KLY  PP   W++  
Subjt:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI

Query:  GALFHSTMAFYKENLENIADRYAEGGESISLLIPWSPLGVTQGYWFFGIQWWRKEGMDEGG----------------EAHLVRWEVVSKSKELGGRGSSI
                               EG       + W       G+    +   R  G D+GG                   +  WE + +    GG G   
Subjt:  GALFHSTMAFYKENLENIADRYAEGGESISLLIPWSPLGVTQGYWFFGIQWWRKEGMDEGG----------------EAHLVRWEVVSKSKELGGRGSSI

Query:  GNLRLRNKALLEKWL
        G + LRN ALL KWL
Subjt:  GNLRLRNKALLEKWL

A5B2S8 Uncharacterized protein5.8e-1331.31Show/hide
Query:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI
        ++SEL  +R   + EL  LI  E+I WR+K +VKW KEGD N+ FF       +NR  I +L  +SG V+     I ++I+ ++ KLY  P G  W   +
Subjt:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI

Query:  GALFHSTMAFYKENL--------ENIADRYAEGGESISLLIPWS------PLGVTQGYWFFGIQW-WRKEGMDEGGEAHLVRWEVVSKSKELGGRGSSIG
          L  S ++  +  +        E + ++   G E +   + +       P  V          + W   G+ E    HLV W+VV  +K  G  G   G
Subjt:  GALFHSTMAFYKENL--------ENIADRYAEGGESISLLIPWS------PLGVTQGYWFFGIQW-WRKEGMDEGGEAHLVRWEVVSKSKELGGRGSSIG

Query:  NLRLRNKALLEKWL
         + LRN ALL KWL
Subjt:  NLRLRNKALLEKWL

A5BTG1 zf-RVT domain-containing protein1.4e-1129.87Show/hide
Query:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI
        +SSEL  +R   + EL  LI  E+I WR+KA+VKW KEGD N+ FF        NR  I  L  +SG ++     I+EEI+ ++ KLY  P G  W++  
Subjt:  MSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNR--IDLLVKDSGEVMRRDFKIEEEIISFYAKLY--PPGLLWKIWI

Query:  GALFHSTMAFYKENLENIADRYAEGGESISLLIPWSPLGVTQGYWFFGIQ-------WWRKEGMDEGGEAHLVR-----------------WEVVSKSKE
        G  +          L  + D  A G   + L +P        G+W   I+        W+K  +  GG   L++                   V +K + 
Subjt:  GALFHSTMAFYKENLENIADRYAEGGESISLLIPWSPLGVTQGYWFFGIQ-------WWRKEGMDEGGEAHLVR-----------------WEVVSKSKE

Query:  LG--------GRGSSIGNLRLRNKALLEKWL
        L         G G     + +RN ALL KWL
Subjt:  LG--------GRGSSIGNLRLRNKALLEKWL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGATAACTGAAAGTAGATGCGTGAAACATGGTGAGAAGAAGCGAAGTAGGTCCTTGGATGCACAAGATCAAGGTGCTTTGATTAGAAACGTCTCTGGTGGAGC
TTCTTCAATCTCCCTGGACTGCAAGCTTGTTAAAGCACTAGGATATGAAAATGAAAAAGAAGGATTGTCGTCCCTTCTGGTAAAAACAAATGAGGTCCTCAAGTTTAGAA
AAAGGAAGCAAGCTTGTCTTCACGAGGATTCGCAATATTTTCACAACATGACATATATGAAGCCTTCCTCCATTGAAATAGCAGAGGGTCGCGAAAGGAATTTTGGGTGG
ATTTTGATAATGTGGAAAAATCTTTTCTTAAATGCAAAAGTAAAAGGTTGCCGATGGATGTCTTCGGAATTGAGGAGGAAGAGAGATACCCTTAGGGTGGAGCTTGGGTC
CTTGATTCATAGTGAGGATATTAGTTGGAGGAAGAAGGCTAAGGTTAAGTGGGCTAAGGAAGGGGATGCCAATACTGTCTTTTTCCAAAATTATCGGAGGAGATGTAAGA
ATCGTATTGATCTTTTGGTTAAAGACAGCGGAGAGGTGATGAGGAGGGATTTCAAGATAGAAGAGGAGATTATCTCTTTCTACGCCAAGCTATATCCCCCCGGCCTTTTG
TGGAAGATTTGGATTGGTGCCCTATTTCATTCTACAATGGCTTTCTACAAGGAAAATTTGGAGAATATTGCAGATAGATATGCAGAAGGAGGTGAATCAATTTCCTTGCT
CATACCATGGTCTCCCCTGGGGGTAACCCAAGGTTATTGGTTTTTTGGAATCCAATGGTGGAGAAAGGAAGGAATGGATGAAGGTGGTGAGGCTCATCTGGTTAGATGGG
AAGTGGTGTCGAAGTCAAAGGAGTTGGGGGGAAGGGGGTCAAGTATTGGTAACCTGAGGCTACGTAACAAGGCCCTTTTGGAGAAATGGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGATAACTGAAAGTAGATGCGTGAAACATGGTGAGAAGAAGCGAAGTAGGTCCTTGGATGCACAAGATCAAGGTGCTTTGATTAGAAACGTCTCTGGTGGAGC
TTCTTCAATCTCCCTGGACTGCAAGCTTGTTAAAGCACTAGGATATGAAAATGAAAAAGAAGGATTGTCGTCCCTTCTGGTAAAAACAAATGAGGTCCTCAAGTTTAGAA
AAAGGAAGCAAGCTTGTCTTCACGAGGATTCGCAATATTTTCACAACATGACATATATGAAGCCTTCCTCCATTGAAATAGCAGAGGGTCGCGAAAGGAATTTTGGGTGG
ATTTTGATAATGTGGAAAAATCTTTTCTTAAATGCAAAAGTAAAAGGTTGCCGATGGATGTCTTCGGAATTGAGGAGGAAGAGAGATACCCTTAGGGTGGAGCTTGGGTC
CTTGATTCATAGTGAGGATATTAGTTGGAGGAAGAAGGCTAAGGTTAAGTGGGCTAAGGAAGGGGATGCCAATACTGTCTTTTTCCAAAATTATCGGAGGAGATGTAAGA
ATCGTATTGATCTTTTGGTTAAAGACAGCGGAGAGGTGATGAGGAGGGATTTCAAGATAGAAGAGGAGATTATCTCTTTCTACGCCAAGCTATATCCCCCCGGCCTTTTG
TGGAAGATTTGGATTGGTGCCCTATTTCATTCTACAATGGCTTTCTACAAGGAAAATTTGGAGAATATTGCAGATAGATATGCAGAAGGAGGTGAATCAATTTCCTTGCT
CATACCATGGTCTCCCCTGGGGGTAACCCAAGGTTATTGGTTTTTTGGAATCCAATGGTGGAGAAAGGAAGGAATGGATGAAGGTGGTGAGGCTCATCTGGTTAGATGGG
AAGTGGTGTCGAAGTCAAAGGAGTTGGGGGGAAGGGGGTCAAGTATTGGTAACCTGAGGCTACGTAACAAGGCCCTTTTGGAGAAATGGTTGTGA
Protein sequenceShow/hide protein sequence
MKKITESRCVKHGEKKRSRSLDAQDQGALIRNVSGGASSISLDCKLVKALGYENEKEGLSSLLVKTNEVLKFRKRKQACLHEDSQYFHNMTYMKPSSIEIAEGRERNFGW
ILIMWKNLFLNAKVKGCRWMSSELRRKRDTLRVELGSLIHSEDISWRKKAKVKWAKEGDANTVFFQNYRRRCKNRIDLLVKDSGEVMRRDFKIEEEIISFYAKLYPPGLL
WKIWIGALFHSTMAFYKENLENIADRYAEGGESISLLIPWSPLGVTQGYWFFGIQWWRKEGMDEGGEAHLVRWEVVSKSKELGGRGSSIGNLRLRNKALLEKWL