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Lag0003996 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0003996
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:255293..255874
RNA-Seq ExpressionLag0003996
SyntenyLag0003996
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3480967.1 reverse transcriptase [Gossypium australe]2.0e-1028.88Show/hide
Query:  DRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPK--GSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPL
        +RN  +H R         +++ +Y+ E  +AN K   SP VQ     S+         ++ D  F      S  G+V+RN +G++ A++S++ E   S  
Subjt:  DRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPK--GSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPL

Query:  GAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ
         AEA+A  E +QL   +    V I  DSL ++K  K  L+  + IV+ ++DI+ + + F+R+ F F++R  + L+H +A + L + +
Subjt:  GAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]9.7e-1029.84Show/hide
Query:  NDRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKG-SPFVQS---PADISYIISNGEDWILHTDATFITGACK---SGIGLVLRNKQGFLQAAQSLVSE
        NDRN+L+H + +  V  +CEW++ +++   +A     SP  QS   P    +  S+     L+TDA     AC+   +  G ++R+    L AA S+   
Subjt:  NDRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKG-SPFVQS---PADISYIISNGEDWILHTDATFITGACK---SGIGLVLRNKQGFLQAAQSLVSE

Query:  VCTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSS
           SPL AE   +LEGL+ A       + + SDSL+ I++++ E+         + +I+ L   F  +SFS  +R+ +  +H +AK G++S
Subjt:  VCTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSS

XP_030483444.1 uncharacterized protein LOC115700033 [Cannabis sativa]7.4e-1033.69Show/hide
Query:  DRNNLVHNRPI--PHVVSRCEWISSYVEEFWKANPKGSPFVQSPADISYIISNGE----DWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVC
        +RN   H R I  PH +    WISSY  E  +   K    V +        SN E     + L+ DA   T     G G ++ +    ++AA S   +  
Subjt:  DRNNLVHNRPI--PHVVSRCEWISSYVEEFWKANPKGSPFVQSPADISYIISNGE----DWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVC

Query:  TSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGL
         S   AEAVA+L GL  AQ VG+    + SDSL L+  L+G+ V    +     DIK L++SF  VS S V+R +++ +H++AK  L
Subjt:  TSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGL

XP_040953658.1 uncharacterized protein LOC121219476 [Gossypium hirsutum]3.9e-1129.89Show/hide
Query:  RNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKGSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAE
        RN LV+ R           IS Y+ E   A  K         + S  +S     I+H D TF +   +S  GL+  N++G L A +++      +P  AE
Subjt:  RNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKGSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAE

Query:  AVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ
        A A L  ++L   +GV ++ +M DS  +IK  K +   ++ I A + DI+T   SF+ + FSF+ +  +I +H +AK  L  ++
Subjt:  AVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ

XP_040957923.1 uncharacterized protein LOC121222088 [Gossypium hirsutum]3.9e-1130.43Show/hide
Query:  RNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKGSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAE
        RN LV+ R           IS Y+ E   A  K         + S  +S     I+H DA F +   +S  GL+  N++G L A Q++      +P   E
Subjt:  RNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKGSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAE

Query:  AVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ
        A A L  ++L   +GV ++ IM DS  +IK  K +   ++ I A + DI+T   SF+ + FSF+ +  +I +H +AK  L  ++
Subjt:  AVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ

TrEMBL top hitse value%identityAlignment
A0A5B6WIR3 Reverse transcriptase9.4e-1128.88Show/hide
Query:  DRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPK--GSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPL
        +RN  +H R         +++ +Y+ E  +AN K   SP VQ     S+         ++ D  F      S  G+V+RN +G++ A++S++ E   S  
Subjt:  DRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPK--GSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPL

Query:  GAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ
         AEA+A  E +QL   +    V I  DSL ++K  K  L+  + IV+ ++DI+ + + F+R+ F F++R  + L+H +A + L + +
Subjt:  GAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ

A0A5B6WTK4 Reverse transcriptase3.0e-0927.81Show/hide
Query:  DRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPK--GSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPL
        +RN  +H R         +++ +Y+ E  +AN K   SP VQ     S+         ++ D  F      S  G+V+RN +G + A++S++ E   S  
Subjt:  DRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPK--GSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPL

Query:  GAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ
         AEA+A  E +QL   +   +V I  DSL ++K  +  L+  + I + ++DI+ + + F+R+ F F++R  + L+H +A + L + +
Subjt:  GAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ

A0A6J1DX30 uncharacterized protein LOC1110248744.7e-1029.84Show/hide
Query:  NDRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKG-SPFVQS---PADISYIISNGEDWILHTDATFITGACK---SGIGLVLRNKQGFLQAAQSLVSE
        NDRN+L+H + +  V  +CEW++ +++   +A     SP  QS   P    +  S+     L+TDA     AC+   +  G ++R+    L AA S+   
Subjt:  NDRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKG-SPFVQS---PADISYIISNGEDWILHTDATFITGACK---SGIGLVLRNKQGFLQAAQSLVSE

Query:  VCTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSS
           SPL AE   +LEGL+ A       + + SDSL+ I++++ E+         + +I+ L   F  +SFS  +R+ +  +H +AK G++S
Subjt:  VCTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSS

A0A7J9IIF5 Uncharacterized protein3.0e-0930.53Show/hide
Query:  NDRNNLVHNRPIPHVVSR--CEWISSYVEEFWKANPK----GSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEV
        N RN LVH R   H+  R   + I SY+ E      +    G+  +Q  ++        ED IL  DA F     +S  G++ RN++G ++  ++ +   
Subjt:  NDRNNLVHNRPIPHVVSR--CEWISSYVEEFWKANPK----GSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEV

Query:  CTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSS
         +SP  AEA+A L+ ++L   +G+R V+I  DS  +IK  +     ++SI A + DIK     F  VSF F+ +  +  +H++AK  L++
Subjt:  CTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSS

A0A7J9J670 RNase H domain-containing protein2.3e-0925.54Show/hide
Query:  RNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKGSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAE
        RN LV+ +           I +Y+ E  +A  +G   + S      ++  G   + H DA F     +S  GL++ N +G +  +Q++       P  AE
Subjt:  RNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKGSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAE

Query:  AVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ
        A A L+ ++L   +G+ K+ +M DS ++IK  +  ++  + I A + DI+   +S++ + FSF+ +  +I +H +A   L   +
Subjt:  AVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.1e-0632Show/hide
Query:  DATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFER
        DA F      S    ++RN  G  Q   SL  +  ++PL AE  A+L  LQ   I G  +V +  D   L  ++ G       +   L DI+     F  
Subjt:  DATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFER

Query:  VSFSFVNRKYSILSHKMAKLGLSSS
        V FSFV R  + ++H++AKLG +S+
Subjt:  VSFSFVNRKYSILSHKMAKLGLSSS

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.6e-0733.86Show/hide
Query:  LHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITS
        + TDA +       G G V+RN            +     PL AEA+A+   LQ AQ +G+ K+S+ SDS  LI  +  E    T     ++DI  L   
Subjt:  LHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAEAVAVLEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITS

Query:  FERVSFSFVNRKYSILSHKMAKLGLSS
        F  VSFSFV R  + ++ ++AK  L S
Subjt:  FERVSFSFVNRKYSILSHKMAKLGLSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAATCGGAATGATAGGAATAATCTAGTTCACAATCGACCGATTCCTCATGTGGTATCGCGTTGTGAATGGATAAGCTCTTACGTAGAGGAATTTTGGAAGGCCAA
TCCGAAGGGTAGTCCATTTGTGCAATCTCCGGCGGATATCTCGTACATTATTTCAAATGGGGAAGATTGGATATTACATACGGATGCGACTTTCATAACGGGCGCATGTA
AAAGTGGTATTGGTCTTGTTTTGCGGAATAAACAAGGATTTTTGCAAGCAGCACAATCCTTGGTTTCTGAAGTTTGTACCTCGCCTTTAGGGGCAGAAGCAGTTGCCGTT
CTTGAGGGTCTTCAACTGGCCCAAATTGTGGGGGTTCGGAAAGTGTCGATTATGTCAGATTCCTTGGTATTAATCAAGATCTTGAAAGGGGAGTTGGTTGGTGAGACTAG
TATTGTTGCAACTCTGTGGGATATTAAGACTCTTATTACTTCCTTTGAGAGGGTGTCTTTTAGTTTTGTCAATCGCAAGTACAGTATACTCTCTCATAAGATGGCTAAAT
TAGGTTTATCGTCGTCGCAATATTGTGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCAATCGGAATGATAGGAATAATCTAGTTCACAATCGACCGATTCCTCATGTGGTATCGCGTTGTGAATGGATAAGCTCTTACGTAGAGGAATTTTGGAAGGCCAA
TCCGAAGGGTAGTCCATTTGTGCAATCTCCGGCGGATATCTCGTACATTATTTCAAATGGGGAAGATTGGATATTACATACGGATGCGACTTTCATAACGGGCGCATGTA
AAAGTGGTATTGGTCTTGTTTTGCGGAATAAACAAGGATTTTTGCAAGCAGCACAATCCTTGGTTTCTGAAGTTTGTACCTCGCCTTTAGGGGCAGAAGCAGTTGCCGTT
CTTGAGGGTCTTCAACTGGCCCAAATTGTGGGGGTTCGGAAAGTGTCGATTATGTCAGATTCCTTGGTATTAATCAAGATCTTGAAAGGGGAGTTGGTTGGTGAGACTAG
TATTGTTGCAACTCTGTGGGATATTAAGACTCTTATTACTTCCTTTGAGAGGGTGTCTTTTAGTTTTGTCAATCGCAAGTACAGTATACTCTCTCATAAGATGGCTAAAT
TAGGTTTATCGTCGTCGCAATATTGTGGCTAG
Protein sequenceShow/hide protein sequence
MGNRNDRNNLVHNRPIPHVVSRCEWISSYVEEFWKANPKGSPFVQSPADISYIISNGEDWILHTDATFITGACKSGIGLVLRNKQGFLQAAQSLVSEVCTSPLGAEAVAV
LEGLQLAQIVGVRKVSIMSDSLVLIKILKGELVGETSIVATLWDIKTLITSFERVSFSFVNRKYSILSHKMAKLGLSSSQYCG