CuGenDBv2

Gene ID	Lag0004004
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr6:340653..341072
RNA-Seq Expression	Lag0004004
Synteny	Lag0004004
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.1e-21

39.13

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Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+S
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRLY LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

9.7e-20

37.68

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Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+ 
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRL+ LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

9.7e-20

37.68

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Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+ 
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRL+ LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

6.7e-21

39.13

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Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+S
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRLY LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]

5.1e-21

39.13

Show/hide

Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+S
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRLY LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein

2.5e-21

39.13

Show/hide

Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+S
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRLY LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein

4.7e-20

37.68

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Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+ 
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRL+ LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein

4.7e-20

37.68

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Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+ 
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRL+ LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein

3.3e-21

39.13

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Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+S
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRLY LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein

2.5e-21

39.13

Show/hide

Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G L I  +K  N ALL+KW+WR+++ D  L  K+I AKY  ++     P V N  SS++ W SI       ++++  ++ NG    FWH  W QN  L+S
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF
         YPRLY LST+  +S+ ++W   +  WD+N RR L E+
Subjt:  LYPRLYKLSTSTHASVANVWKTDIGVWDMNFRRNLNEF

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.0e-04

30.1

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Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYY-PMATNQQWPMVSNEGSSKALWSSISM-LNNIVKQNIKRELGNGNYILFWHDVWIQNHTL
        G L +   K  N AL+SK  WR +    +L   V++ KY+     + +W  +  +GS  + W SI++ L ++V   +    G+G  I FW D W+    L
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYY-PMATNQQWPMVSNEGSSKALWSSISM-LNNIVKQNIKRELGNGNYILFWHDVWIQNHTL

Query:  TSL
          L
Subjt:  TSL

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

9.7e-10

27.27

Show/hide

Query:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS
        G +   +I+  N+ALL K +WR +   E+L  KV K++Y+  +     P+ S       +W SI     I++Q  +  +GNG  I+ W   W+ +   ++
Subjt:  GSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTS

Query:  LYPRLYKLSTSTHASVANVWK
           R+ ++    +ASV+++ K
Subjt:  LYPRLYKLSTSTHASVANVWK

Sequences

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CDS sequence

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ATGGGTAGTCTGGCCATTGGTAACATCAAACATAGGAATGTGGCTCTTTTATCAAAATGGATATGGAGATTTGTTTATGGAGATGAAGCTCTCAGGTGTAAAGTCATCAA
AGCTAAGTATTACCCTATGGCTACCAACCAACAATGGCCTATGGTTTCAAATGAAGGTTCCTCTAAAGCACTGTGGTCATCGATTTCTATGTTAAACAACATTGTAAAAC
AGAATATTAAAAGAGAATTGGGCAATGGAAATTACATATTGTTTTGGCATGATGTCTGGATCCAAAATCACACTTTGACTTCCTTATATCCAAGACTATACAAACTTTCC
ACAAGTACTCATGCTTCGGTGGCCAATGTATGGAAAACTGATATTGGAGTTTGGGACATGAATTTCAGGAGAAATCTAAATGAATTCTGA

mRNA sequence

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Protein sequence

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MGSLAIGNIKHRNVALLSKWIWRFVYGDEALRCKVIKAKYYPMATNQQWPMVSNEGSSKALWSSISMLNNIVKQNIKRELGNGNYILFWHDVWIQNHTLTSLYPRLYKLS
TSTHASVANVWKTDIGVWDMNFRRNLNEF

Lag0004004 (gene) of Sponge gourd (AG-4) v1 genome