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Lag0004014 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004014
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontranscription factor PRE6-like
Genome locationchr6:394207..397393
RNA-Seq ExpressionLag0004014
SyntenyLag0004014
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]2.9e-2775.79Show/hide
Query:  SFRRSSRSRNSSSGGQ-ISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRNS++    ISDDQI DLVSKL RLIPE+RN   SHK SAS+VLQETCNYIRNLHREVDDLS+RLSQLLA+T+ND+A+A IIR+LF+
Subjt:  SFRRSSRSRNSSSGGQ-ISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]1.2e-2880Show/hide
Query:  SFRRSSRSRNSS-SGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRNSS S   ISDDQI DLVSKL RLIPE+RN   SHKVSAS+VLQETCNYIRNLHREVDDLS+RLSQLLA+T+ND+A+AAIIR+LF+
Subjt:  SFRRSSRSRNSS-SGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]2.2e-3085.11Show/hide
Query:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRN SSG QISDDQI+DLVSKL RLIPEIRNT  SHKVSASKVLQETCNYIRNLHREVDDLS+RLSQLLA+T+ND+A+AAIIR+LF+
Subjt:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]4.8e-3084.04Show/hide
Query:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRN +SG QISDDQI+DLVSKL RLIPEIRNT  SHKVSASKVLQETCNYIRNLHREVDDLS+RLSQLLA+T+ND+A+AAIIR+LF+
Subjt:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]1.7e-3081.91Show/hide
Query:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRNSS    ISDDQI+DLVSKL RLIPE+RN   SHKVSASKVLQETCNYIRNLHREVDDLS+RLSQLLAST+ND+A+AAIIR+LF+
Subjt:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

TrEMBL top hitse value%identityAlignment
A0A0A0KDL6 BHLH domain-containing protein1.4e-2775.79Show/hide
Query:  SFRRSSRSRNSSSGGQ-ISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRNS++    ISDDQI DLVSKL RLIPE+RN   SHK SAS+VLQETCNYIRNLHREVDDLS+RLSQLLA+T+ND+A+A IIR+LF+
Subjt:  SFRRSSRSRNSSSGGQ-ISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

A0A1S3CPL2 transcription factor PRE6-like5.7e-2980Show/hide
Query:  SFRRSSRSRNSS-SGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRNSS S   ISDDQI DLVSKL RLIPE+RN   SHKVSAS+VLQETCNYIRNLHREVDDLS+RLSQLLA+T+ND+A+AAIIR+LF+
Subjt:  SFRRSSRSRNSS-SGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

A0A5D3BPI2 Transcription factor PRE6-like5.7e-2980Show/hide
Query:  SFRRSSRSRNSS-SGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRNSS S   ISDDQI DLVSKL RLIPE+RN   SHKVSAS+VLQETCNYIRNLHREVDDLS+RLSQLLA+T+ND+A+AAIIR+LF+
Subjt:  SFRRSSRSRNSS-SGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

A0A6J1G4C0 transcription factor PRE6-like1.0e-3085.11Show/hide
Query:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRN SSG QISDDQI+DLVSKL RLIPEIRNT  SHKVSASKVLQETCNYIRNLHREVDDLS+RLSQLLA+T+ND+A+AAIIR+LF+
Subjt:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

A0A6J1KGK3 transcription factor PRE6-like1.0e-3085.11Show/hide
Query:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        S RRSSRSRN SSG QISDDQI+DLVSKL RLIPEIRNT  SHKVSASKVLQETCNYIRNLHREVDDLS+RLSQLLA+T+ND+A+AAIIR+LF+
Subjt:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

SwissProt top hitse value%identityAlignment
Q8GW32 Transcription factor PRE62.0e-2676.09Show/hide
Query:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL
        S RRSSRSR S S  +ISDDQI+DLVSKL  LIPE+R    S KVSASKVLQETCNYIRNLHREVDDLSDRLS+LLAST +++A+AAIIR+L
Subjt:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL

Q9CA64 Transcription factor PRE31.8e-2467.42Show/hide
Query:  RSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL
        R SRSR SS   +IS+DQINDL+ KL +L+PE+R++  S KVSA++VLQ+TCNYIRNLHREVDDLS+RLS+LLA+  +DTAQAA+IR+L
Subjt:  RSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL

Q9FLE9 Transcription factor PRE16.5e-2263.64Show/hide
Query:  RSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        RSR SSS  +ISD+Q+ DLVSKL +++PEI     S K SASKVLQETCNYIRNL+REVD+LS+RLSQLL S   D+ +AA+IR+L +
Subjt:  RSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

Q9LJX1 Transcription factor PRE55.9e-2364.77Show/hide
Query:  RSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        RSR +S+  +ISDDQ+ DLVSKL + +PEI     S KVSASKVLQETCNYIR LHREVD+LSDRLSQLL S   D+ +AA+IR+L +
Subjt:  RSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

Q9LXG5 Transcription factor PRE25.9e-2365.91Show/hide
Query:  SSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL
        S RSR +SS  +ISDDQI DL+SKL + IPEIR    S+ VSASKVLQETCNYIRNL++E DDLSDRL+QLL S   ++ QAA+IR+L
Subjt:  SSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.4e-2776.09Show/hide
Query:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL
        S RRSSRSR S S  +ISDDQI+DLVSKL  LIPE+R    S KVSASKVLQETCNYIRNLHREVDDLSDRLS+LLAST +++A+AAIIR+L
Subjt:  SFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.3e-2567.42Show/hide
Query:  RSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL
        R SRSR SS   +IS+DQINDL+ KL +L+PE+R++  S KVSA++VLQ+TCNYIRNLHREVDDLS+RLS+LLA+  +DTAQAA+IR+L
Subjt:  RSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein4.2e-2464.77Show/hide
Query:  RSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        RSR +S+  +ISDDQ+ DLVSKL + +PEI     S KVSASKVLQETCNYIR LHREVD+LSDRLSQLL S   D+ +AA+IR+L +
Subjt:  RSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI

AT5G15160.1 BANQUO 24.2e-2465.91Show/hide
Query:  SSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL
        S RSR +SS  +ISDDQI DL+SKL + IPEIR    S+ VSASKVLQETCNYIRNL++E DDLSDRL+QLL S   ++ QAA+IR+L
Subjt:  SSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein4.6e-2363.64Show/hide
Query:  RSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI
        RSR SSS  +ISD+Q+ DLVSKL +++PEI     S K SASKVLQETCNYIRNL+REVD+LS+RLSQLL S   D+ +AA+IR+L +
Subjt:  RSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRNLHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATTCCTCGCGAGTTTTCGAAGATGAAGAACCTACTGGTTCCAGATCTGGGCTCGAAAAATTCATGGGTTTCATTCTATTTATGAGTTTCAAGCTGGATCGGGG
CGGCGCGACTTCAGGCAAACGAATGCTTCAGACTCGGCGCAGCTTCAGAAGATCTTCCCGTTCCAGAAACTCGTCATCAGGTGGCCAAATCTCTGACGATCAGATCAATG
ACCTCGTTTCCAAGTTGCACCGCCTCATCCCTGAGATTCGCAACACCGCAAATTCCCACAAGGTGTCGGCTTCGAAAGTGTTGCAAGAAACATGCAATTACATAAGGAAC
TTACACAGGGAAGTGGATGATTTGAGTGACAGATTGTCGCAGCTTTTGGCCTCAACACAAAACGACACTGCCCAGGCTGCTATTATTAGGACTTTATTCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATTCCTCGCGAGTTTTCGAAGATGAAGAACCTACTGGTTCCAGATCTGGGCTCGAAAAATTCATGGGTTTCATTCTATTTATGAGTTTCAAGCTGGATCGGGG
CGGCGCGACTTCAGGCAAACGAATGCTTCAGACTCGGCGCAGCTTCAGAAGATCTTCCCGTTCCAGAAACTCGTCATCAGGTGGCCAAATCTCTGACGATCAGATCAATG
ACCTCGTTTCCAAGTTGCACCGCCTCATCCCTGAGATTCGCAACACCGCAAATTCCCACAAGGTGTCGGCTTCGAAAGTGTTGCAAGAAACATGCAATTACATAAGGAAC
TTACACAGGGAAGTGGATGATTTGAGTGACAGATTGTCGCAGCTTTTGGCCTCAACACAAAACGACACTGCCCAGGCTGCTATTATTAGGACTTTATTCATCTAA
Protein sequenceShow/hide protein sequence
MVDSSRVFEDEEPTGSRSGLEKFMGFILFMSFKLDRGGATSGKRMLQTRRSFRRSSRSRNSSSGGQISDDQINDLVSKLHRLIPEIRNTANSHKVSASKVLQETCNYIRN
LHREVDDLSDRLSQLLASTQNDTAQAAIIRTLFI