; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004160 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004160
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr6:1494378..1494803
RNA-Seq ExpressionLag0004160
SyntenyLag0004160
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW39368.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.1e-2244.8Show/hide
Query:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH
        +DRFL + +  T F  +  + L R TSDH PICL     KWGP+PFRF N WL HP F +    WW   +  GW GH F++KLK +K +LK WN  TFG 
Subjt:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH

Query:  QKEAKAQLGRELSSIDHKDETDQLS
         KE K  +  +LS ID  ++   L+
Subjt:  QKEAKAQLGRELSSIDHKDETDQLS

RVW96808.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]2.8e-2244.8Show/hide
Query:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH
        +DRFL + +  T F  +  + L R TSDH PICL     KWGP+PFRF N WL HP F +    WW   +  GW GH F++KLK +K +LK WN  TFG 
Subjt:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH

Query:  QKEAKAQLGRELSSIDHKDETDQLS
         KE K  +  +LS ID  ++   L+
Subjt:  QKEAKAQLGRELSSIDHKDETDQLS

RVX05721.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]3.6e-2244.8Show/hide
Query:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH
        +DRFL + +  T F  +  + L R TSDH PICL     KWGP+PFRF N WL HP F +    WW   +  GW GH F++KLK +K +LK WN  TFG 
Subjt:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH

Query:  QKEAKAQLGRELSSIDHKDETDQLS
         KE K  +  +LS ID  ++   L+
Subjt:  QKEAKAQLGRELSSIDHKDETDQLS

RVX15530.1 putative ribonuclease H protein [Vitis vinifera]2.1e-2244.8Show/hide
Query:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH
        +DRFL + +  T F  +  + L R TSDH PICL     KWGP+PFRF N WL HP F +    WW   +  GW GH F++KLK +K +LK WN  TFG 
Subjt:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH

Query:  QKEAKAQLGRELSSIDHKDETDQLS
         KE K  +  +LS ID  ++   L+
Subjt:  QKEAKAQLGRELSSIDHKDETDQLS

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]2.8e-2243.22Show/hide
Query:  TLIDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTF
        +LID FL+T     K G  + KR+ R TSDH+PI L  G   WG +PFRF N WLSH +F   +++WW +  + GWPGHG + KLK LK  +K+W  + F
Subjt:  TLIDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTF

Query:  GHQKEAKAQLGRELSSID
              K  L   ++S+D
Subjt:  GHQKEAKAQLGRELSSID

TrEMBL top hitse value%identityAlignment
A0A438DVQ8 LINE-1 retrotransposable element ORF2 protein1.0e-2244.8Show/hide
Query:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH
        +DRFL + +  T F  +  + L R TSDH PICL     KWGP+PFRF N WL HP F +    WW   +  GW GH F++KLK +K +LK WN  TFG 
Subjt:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH

Query:  QKEAKAQLGRELSSIDHKDETDQLS
         KE K  +  +LS ID  ++   L+
Subjt:  QKEAKAQLGRELSSIDHKDETDQLS

A0A438IJB1 Transposon TX1 uncharacterized 149 kDa protein1.3e-2244.8Show/hide
Query:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH
        +DRFL + +  T F  +  + L R TSDH PICL     KWGP+PFRF N WL HP F +    WW   +  GW GH F++KLK +K +LK WN  TFG 
Subjt:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH

Query:  QKEAKAQLGRELSSIDHKDETDQLS
         KE K  +  +LS ID  ++   L+
Subjt:  QKEAKAQLGRELSSIDHKDETDQLS

A0A438K2W1 Putative ribonuclease H protein1.0e-2244.8Show/hide
Query:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH
        +DRFL + +  T F  +  + L R TSDH PICL     KWGP+PFRF N WL HP F +    WW   +  GW GH F++KLK +K +LK WN  TFG 
Subjt:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH

Query:  QKEAKAQLGRELSSIDHKDETDQLS
         KE K  +  +LS ID  ++   L+
Subjt:  QKEAKAQLGRELSSIDHKDETDQLS

A0A6J1E2G6 uncharacterized protein LOC1110254051.3e-2243.22Show/hide
Query:  TLIDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTF
        +LID FL+T     K G  + KR+ R TSDH+PI L  G   WG +PFRF N WLSH +F   +++WW +  + GWPGHG + KLK LK  +K+W  + F
Subjt:  TLIDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTF

Query:  GHQKEAKAQLGRELSSID
              K  L   ++S+D
Subjt:  GHQKEAKAQLGRELSSID

M5VS59 Reverse transcriptase domain-containing protein (Fragment)1.0e-2241.94Show/hide
Query:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH
        +DRFL++G     F     K L RITSDH PI L     KWGPSPFRF N WL+HP FM+ +  WW  + + GW G+ F+ +LK LK +LK+W+ + FG 
Subjt:  IDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGH

Query:  QKEAKAQLGRELSSIDHKDETDQL
         +    +    L  +D ++ T+ L
Subjt:  QKEAKAQLGRELSSIDHKDETDQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCTCATCGACAGGTTCCTTATAACAGGTGACATCTCCACCAAATTCGGATCTGCCATGGTTAAAAGGTTGGATCGTATTACATCTGATCACTATCCTATC
TGCCTCACGCTGGGACACGAGAAATGGGGCCCCTCTCCATTTCGTTTTATTAATGCTTGGCTTTCCCACCCATCATTCATGAAAACAGTCGATTCATGGTGGAAT
TCCAACTCTGTTATTGGGTGGCCGGGTCATGGCTTCATCCAAAAACTCAAGGGGCTTAAAAAGGAGCTTAAAATCTGGAATCACCAGACCTTCGGGCACCAAAAA
GAGGCTAAAGCTCAACTAGGCCGAGAGCTCTCTTCCATTGACCACAAAGATGAGACTGACCAGTTATCTGAACAGGACATCAATAAAGATCGAAAATCAAAGCTG
ATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTCTCATCGACAGGTTCCTTATAACAGGTGACATCTCCACCAAATTCGGATCTGCCATGGTTAAAAGGTTGGATCGTATTACATCTGATCACTATCCTATC
TGCCTCACGCTGGGACACGAGAAATGGGGCCCCTCTCCATTTCGTTTTATTAATGCTTGGCTTTCCCACCCATCATTCATGAAAACAGTCGATTCATGGTGGAAT
TCCAACTCTGTTATTGGGTGGCCGGGTCATGGCTTCATCCAAAAACTCAAGGGGCTTAAAAAGGAGCTTAAAATCTGGAATCACCAGACCTTCGGGCACCAAAAA
GAGGCTAAAGCTCAACTAGGCCGAGAGCTCTCTTCCATTGACCACAAAGATGAGACTGACCAGTTATCTGAACAGGACATCAATAAAGATCGAAAATCAAAGCTG
ATCTGA
Protein sequenceShow/hide protein sequence
MTLIDRFLITGDISTKFGSAMVKRLDRITSDHYPICLTLGHEKWGPSPFRFINAWLSHPSFMKTVDSWWNSNSVIGWPGHGFIQKLKGLKKELKIWNHQTFGHQK
EAKAQLGRELSSIDHKDETDQLSEQDINKDRKSKLI