CuGenDBv2

Gene ID	Lag0004241
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	F-box protein GID2-like
Genome location	chr6:2202799..2203736
RNA-Seq Expression	Lag0004241
Synteny	Lag0004241
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-47

81.51

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Query:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQWYKTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPPCNPWGKDELPFPL
        +IGS  C PWGKDEL   L
Subjt:  MIGSPPCNPWGKDELPFPL

XP_008445558.1 PREDICTED: F-box protein GID2-like [Cucumis melo]

2.5e-43

76.61

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Query:  MKKIKSDF--QEQP----PVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY
        +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLY
Subjt:  MKKIKSDF--QEQP----PVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY

Query:  PFAPMIGSPPCN-PWGKDELPFPL
        PF PMIG   CN PWGKDE+   L
Subjt:  PFAPMIGSPPCN-PWGKDELPFPL

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]

6.9e-46

79.83

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Query:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQW KTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPPCNPWGKDELPFPL
        ++GS  C PWGKDEL   L
Subjt:  MIGSPPCNPWGKDELPFPL

XP_022996700.1 F-box protein GID2-like [Cucurbita maxima]

1.7e-44

78.15

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Query:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  QEQ  PP   + FANLDD+LLFEVFKHVDARTLATA+ VSKQWYKTAHDE LWEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPPCNPWGKDELPFPL
        +IGS  C  WGK E+   L
Subjt:  MIGSPPCNPWGKDELPFPL

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

3.7e-47

80.83

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Query:  MKKIKSDFQEQ---PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFA
        MKKIKS  QEQ   PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQWYKTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF 
Subjt:  MKKIKSDFQEQ---PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFA

Query:  PMIGSPPCNPWGKDELPFPL
        P+IGS  C PWGKDE+   L
Subjt:  PMIGSPPCNPWGKDELPFPL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR75 F-box domain-containing protein

2.0e-43

74.59

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Query:  MKKIKSDFQEQPP----VPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF
        +KK KS   +Q P      P+ FANLDD+LLFEVFKHVDARTLAT A VSKQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLYPF
Subjt:  MKKIKSDFQEQPP----VPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF

Query:  APMIGSPPCN-PWGKDELPFPL
         PMIG   CN PWGKDE+   L
Subjt:  APMIGSPPCN-PWGKDELPFPL

A0A1S3BDV6 F-box protein GID2-like

1.2e-43

76.61

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Query:  MKKIKSDF--QEQP----PVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY
        +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLY
Subjt:  MKKIKSDF--QEQP----PVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY

Query:  PFAPMIGSPPCN-PWGKDELPFPL
        PF PMIG   CN PWGKDE+   L
Subjt:  PFAPMIGSPPCN-PWGKDELPFPL

A0A5A7V5E1 F-box protein GID2-like

1.2e-43

76.61

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Query:  MKKIKSDF--QEQP----PVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY
        +KK KSD   QE+P    P P T FANLDD+LLFEVFKHVDARTLATAA V+KQW+KTAHDERLWEL+CTKHW N+GCANQQLRSVVLALGGFRRLHSLY
Subjt:  MKKIKSDF--QEQP----PVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLY

Query:  PFAPMIGSPPCN-PWGKDELPFPL
        PF PMIG   CN PWGKDE+   L
Subjt:  PFAPMIGSPPCN-PWGKDELPFPL

A0A6J1HCI1 F-box protein GID2-like

3.4e-46

79.83

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Query:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  +EQ  PP   + FANLDD+LLFEVFKHVDARTLATAA VSKQW KTAHDE LWEL+CTKHWANIGCANQQLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPPCNPWGKDELPFPL
        ++GS  C PWGKDEL   L
Subjt:  MIGSPPCNPWGKDELPFPL

A0A6J1K7I7 F-box protein GID2-like

8.3e-45

78.15

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Query:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP
        MKKIKS  QEQ  PP   + FANLDD+LLFEVFKHVDARTLATA+ VSKQWYKTAHDE LWEL+CTKHWANIGCAN QLRSVVLALGGFRRLHSLYPF P
Subjt:  MKKIKSDFQEQ--PPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAP

Query:  MIGSPPCNPWGKDELPFPL
        +IGS  C  WGK E+   L
Subjt:  MIGSPPCNPWGKDELPFPL

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.6e-21

48.67

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Query:  EQPPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPM--IGSPPCNP
        EQP VP     +L +DL+FEV +  +ARTLA AA VS+ W + A DERLWE  C + WAN+G + +QLR+VVL+LGGFRRLH++Y   P+   G+     
Subjt:  EQPPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPM--IGSPPCNP

Query:  WGKDELPFPLGED
         G+ + P  LG D
Subjt:  WGKDELPFPLGED

Q9LUB6 F-box protein SNE

1.7e-07

32.35

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Query:  PTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSPPCNPWGKDELPF
        P +  N   D+L E+ + +D  +L +AA V + W   A ++ +WE +C +  +     +  LRSVV ALGG+R L+ L    P++   P   W +D+L  
Subjt:  PTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSPPCNPWGKDELPF

Query:  PL
         L
Subjt:  PL

Q9STX3 F-box protein GID2

4.5e-32

60.34

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Query:  KKIKSDFQEQPPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG
        KK+KS  +E+       F+NLD++L++EV KHVDA+TLA ++ VSK W+KTA DERLWELICT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+  
Subjt:  KKIKSDFQEQPPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG

Query:  SPPCNPWGKDELPFPL
          P   +GKDEL   L
Subjt:  SPPCNPWGKDELPFPL

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

3.2e-33

60.34

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Query:  KKIKSDFQEQPPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG
        KK+KS  +E+       F+NLD++L++EV KHVDA+TLA ++ VSK W+KTA DERLWELICT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+  
Subjt:  KKIKSDFQEQPPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIG

Query:  SPPCNPWGKDELPFPL
          P   +GKDEL   L
Subjt:  SPPCNPWGKDELPFPL

AT5G48170.1 F-box family protein

1.2e-08

32.35

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Query:  PTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSPPCNPWGKDELPF
        P +  N   D+L E+ + +D  +L +AA V + W   A ++ +WE +C +  +     +  LRSVV ALGG+R L+ L    P++   P   W +D+L  
Subjt:  PTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSPPCNPWGKDELPF

Query:  PL
         L
Subjt:  PL

Sequences

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CDS sequence

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ATGAAGAAAATCAAGTCAGATTTTCAGGAACAACCACCTGTACCACCAACTTGGTTTGCCAATTTAGACGACGATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAG
GACACTGGCCACGGCGGCCGCCGTCAGCAAGCAGTGGTACAAAACGGCGCACGACGAGCGCCTCTGGGAGCTCATCTGCACCAAACACTGGGCCAACATCGGCTGTGCCA
ACCAACAGCTACGCTCCGTCGTGCTCGCGCTTGGTGGCTTCCGTCGATTGCACTCTCTTTACCCATTTGCGCCGATGATTGGATCGCCGCCCTGTAATCCATGGGGGAAA
GACGAGCTTCCTTTCCCACTGGGAGAAGACCCACAGACTCGTTTCAATGGTTCTGTACCAAATAGTTCATCGTTTTGCGTCAAATCATGGGGTCCTAAATTACAAGTTGA
GAAGAGAAAAAGTCCATGGGGTCTCATAGATTCACAGAGATAG

mRNA sequence

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Protein sequence

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MKKIKSDFQEQPPVPPTWFANLDDDLLFEVFKHVDARTLATAAAVSKQWYKTAHDERLWELICTKHWANIGCANQQLRSVVLALGGFRRLHSLYPFAPMIGSPPCNPWGK
DELPFPLGEDPQTRFNGSVPNSSSFCVKSWGPKLQVEKRKSPWGLIDSQR

Lag0004241 (gene) of Sponge gourd (AG-4) v1 genome