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Lag0004264 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004264
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:2409172..2410294
RNA-Seq ExpressionLag0004264
SyntenyLag0004264
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KJB11692.1 hypothetical protein B456_001G272100 [Gossypium raimondii]2.4e-0645.33Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H DAAY   TS S  GLV WD  G L A++ + +   +SPL AEA T LEG+++  +L +H + +M DS T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
MBA0673298.1 hypothetical protein [Gossypium klotzschianum]9.1e-0641.33Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H D AY  +TS S  GLV WD  G+L A++T+++    SP  A+A   LEG+++   L +H + +M DS T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
MBA0733287.1 hypothetical protein [Gossypium gossypioides]9.1e-0644Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H DAAY   TS S  GLV WD  G L A++T+ +    SP  AEA   LEG+++  +L +H + +M DS T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
MBA0817678.1 hypothetical protein [Gossypium harknessii]5.9e-0541.33Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H DAAY  +TS S  GLV WD  G+L A++T+ +    SP  AEA    EG ++   L +H + +M D  T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
XP_016681349.1 uncharacterized protein LOC107900161 [Gossypium hirsutum]5.9e-0542.67Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H DAAY   TS S   LV WD  G L A++T+ +    SP  AEA   LEG+++  +L +H + +M DS T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
TrEMBL top hitse value%identityAlignment
A0A0D2M3V7 RNase H domain-containing protein1.2e-0645.33Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H DAAY   TS S  GLV WD  G L A++ + +   +SPL AEA T LEG+++  +L +H + +M DS T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
A0A1U8IZI0 uncharacterized protein LOC1079001612.8e-0542.67Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H DAAY   TS S   LV WD  G L A++T+ +    SP  AEA   LEG+++  +L +H + +M DS T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
A0A7J8WE22 RNase H domain-containing protein4.4e-0641.33Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H D AY  +TS S  GLV WD  G+L A++T+++    SP  A+A   LEG+++   L +H + +M DS T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
A0A7J9BAA2 Uncharacterized protein (Fragment)4.4e-0644Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H DAAY   TS S  GLV WD  G L A++T+ +    SP  AEA   LEG+++  +L +H + +M DS T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
A0A7J9I6Y7 RNase H domain-containing protein2.8e-0541.33Show/hide
Query:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
        +H DAAY  +TS S  GLV WD  G+L A++T+ +    SP  AEA    EG ++   L +H + +M D  T+IK
Subjt:  LHTDAAYMGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCATGATTCTTGGCTCCCTAGACCCACCACCTTTAAGGTGGTTTCATCACCAAACCCTTATGTGAAGAATGTTGTTGTGTTGGAGTACATTACTCCATCATTGCA
ATGGGATGTTGTGAAACTGCACCAGTACCTGGTGCGGGAAGATGTAGAGGAGAATATACTTGTTAAGAGTGGGTATAAGCTCAGTATGATGAATGCTCAAGATCAGGCTT
CTTTGTCAGGGGCTAATCCGAAGGGTGGTGCATATGTTCAGTTTGCGGAAGATGTTCGTATTCTGATCTCACAAGGTGAAGAGTTTATTTTGCACACCGATGCAGCTTAT
ATGGGACGTACGAGCATAAGTGGGATTGGGTTAGTACTGTGGGATAAATTTGGTCATCTCAAGGCAGTACAAACTTTATATTATCTGGTTTGTACATCTCCTTTAGGGGC
GGAAGCGGTAACTGTGCTAGAAGGGCTTCGCATGGCTAGAACCTTGGGGGTGCATCGTTTAACGGTGATGTCTGATTCTCTGACATTAATCAAATCTATTAATGGGGAGG
TCCAGTGTGATTCTTGCATAGCTAGACTCTTTGGGACATCAAGGCTATACAAAATTCGTTTGAAAAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCATGATTCTTGGCTCCCTAGACCCACCACCTTTAAGGTGGTTTCATCACCAAACCCTTATGTGAAGAATGTTGTTGTGTTGGAGTACATTACTCCATCATTGCA
ATGGGATGTTGTGAAACTGCACCAGTACCTGGTGCGGGAAGATGTAGAGGAGAATATACTTGTTAAGAGTGGGTATAAGCTCAGTATGATGAATGCTCAAGATCAGGCTT
CTTTGTCAGGGGCTAATCCGAAGGGTGGTGCATATGTTCAGTTTGCGGAAGATGTTCGTATTCTGATCTCACAAGGTGAAGAGTTTATTTTGCACACCGATGCAGCTTAT
ATGGGACGTACGAGCATAAGTGGGATTGGGTTAGTACTGTGGGATAAATTTGGTCATCTCAAGGCAGTACAAACTTTATATTATCTGGTTTGTACATCTCCTTTAGGGGC
GGAAGCGGTAACTGTGCTAGAAGGGCTTCGCATGGCTAGAACCTTGGGGGTGCATCGTTTAACGGTGATGTCTGATTCTCTGACATTAATCAAATCTATTAATGGGGAGG
TCCAGTGTGATTCTTGCATAGCTAGACTCTTTGGGACATCAAGGCTATACAAAATTCGTTTGAAAAGGTGA
Protein sequenceShow/hide protein sequence
MFHDSWLPRPTTFKVVSSPNPYVKNVVVLEYITPSLQWDVVKLHQYLVREDVEENILVKSGYKLSMMNAQDQASLSGANPKGGAYVQFAEDVRILISQGEEFILHTDAAY
MGRTSISGIGLVLWDKFGHLKAVQTLYYLVCTSPLGAEAVTVLEGLRMARTLGVHRLTVMSDSLTLIKSINGEVQCDSCIARLFGTSRLYKIRLKR