; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004280 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004280
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr6:2542265..2543631
RNA-Seq ExpressionLag0004280
SyntenyLag0004280
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039476.1 uncharacterized protein E6C27_scaffold64G002900 [Cucumis melo var. makuwa]8.5e-5151.49Show/hide
Query:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR
        +++P+K Y IERL  LGA  F G T+NP D E W+  +EKC  V  CPED+KV LA FLL+  A DWW++  SRR  +  I+W+EFKK F++++YPR +R
Subjt:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR

Query:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI
          K+ EFL L QG+MTV EYE+KY EL KYA+ +I DEV++ KRFE+G R+EIRT VT   +W +  +LVEAA+R+ KS++ERK  R+ SK      +S+
Subjt:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI

Query:  SR
         R
Subjt:  SR

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]1.1e-5353.47Show/hide
Query:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR
        +++PEK Y IERL  LGA  F G T+NPADAE W+  +EKC  V  CPED+KV LA FLL+  A DWW++  SRR  +  I+WNEFKK F++++YPR +R
Subjt:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR

Query:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI
          K+ EFL L QG+MT+ EYE+KY EL  YA+ +I DEV++CKRFE+G R+EIRT VT   +W +  +LVEAA+R+EKS++ERK  R+ SK      +S+
Subjt:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI

Query:  SR
         R
Subjt:  SR

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.5e-5045.99Show/hide
Query:  ETSHSKEEQQEDVHDKERRLMANIALAVAEGIRMFKNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAAR
        +   S+   +E+V   E +L+  +A  +  GIR  +++PEK Y  ERL  LGA  F G T+NP D E W+  +EKC  V    ED+KV LA FLL+  A 
Subjt:  ETSHSKEEQQEDVHDKERRLMANIALAVAEGIRMFKNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAAR

Query:  DWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYRYEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTE
        DWW++  SRR  +  ++W+EFKK F++++YPR +R  K  EF+ L QG MTV EYE+KY EL KYA+ +I DE ++CKRFE+G R+EIRT VT   +W +
Subjt:  DWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYRYEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTE

Query:  SGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSISR
          +LVE A+R+EKS++ERK  R+ SK      +S+ R
Subjt:  SGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSISR

TYK15233.1 uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]8.5e-5151.49Show/hide
Query:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR
        +++P+K Y IERL  LGA  F G T+NP D E W+  +EKC  V  CPED+KV LA FLL+  A DWW++  SRR  +  I+W+EFKK F++++YPR +R
Subjt:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR

Query:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI
          K+ EFL L QG+MTV EYE+KY EL KYA+ +I DEV++ KRFE+G R+EIRT VT   +W +  +LVEAA+R+ KS++ERK  R+ SK      +S+
Subjt:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI

Query:  SR
         R
Subjt:  SR

XP_022846659.1 uncharacterized protein LOC111369392 isoform X2 [Olea europaea var. sylvestris]3.2e-5047.81Show/hide
Query:  VGETSHSKEEQ--QEDVHDKERRLMANIALAVAEGIRMFKNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLK
        V E+ H   EQ  Q +V   +   +  IA+AVA  +R    N ++++ IER   LGA  FTG T++PA A+ WM K+E+  +VM C +D+K+ LATFLL+
Subjt:  VGETSHSKEEQ--QEDVHDKERRLMANIALAVAEGIRMFKNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLK

Query:  EAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYRYEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTGLE
        E A DWW+ V S   D  +ITW EF+++FY+ YYPR Y+  KQ+EFL L QG MTV EY+ +++EL KYA  ++ +E+DKC+RFE+G R+EIR+ VT   
Subjt:  EAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYRYEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTGLE

Query:  WTESGRLVEAAMRIEKSISERKPPRKQS
        W   G+LVE+A+R+EKSIS+R   R+Q+
Subjt:  WTESGRLVEAAMRIEKSISERKPPRKQS

TrEMBL top hitse value%identityAlignment
A0A5A7TBS0 CCHC-type domain-containing protein4.1e-5151.49Show/hide
Query:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR
        +++P+K Y IERL  LGA  F G T+NP D E W+  +EKC  V  CPED+KV LA FLL+  A DWW++  SRR  +  I+W+EFKK F++++YPR +R
Subjt:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR

Query:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI
          K+ EFL L QG+MTV EYE+KY EL KYA+ +I DEV++ KRFE+G R+EIRT VT   +W +  +LVEAA+R+ KS++ERK  R+ SK      +S+
Subjt:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI

Query:  SR
         R
Subjt:  SR

A0A5A7UZM6 Gag protease polyprotein-like protein5.2e-5453.47Show/hide
Query:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR
        +++PEK Y IERL  LGA  F G T+NPADAE W+  +EKC  V  CPED+KV LA FLL+  A DWW++  SRR  +  I+WNEFKK F++++YPR +R
Subjt:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR

Query:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI
          K+ EFL L QG+MT+ EYE+KY EL  YA+ +I DEV++CKRFE+G R+EIRT VT   +W +  +LVEAA+R+EKS++ERK  R+ SK      +S+
Subjt:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI

Query:  SR
         R
Subjt:  SR

A0A5D3BB91 Reverse transcriptase1.2e-5045.99Show/hide
Query:  ETSHSKEEQQEDVHDKERRLMANIALAVAEGIRMFKNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAAR
        +   S+   +E+V   E +L+  +A  +  GIR  +++PEK Y  ERL  LGA  F G T+NP D E W+  +EKC  V    ED+KV LA FLL+  A 
Subjt:  ETSHSKEEQQEDVHDKERRLMANIALAVAEGIRMFKNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAAR

Query:  DWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYRYEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTE
        DWW++  SRR  +  ++W+EFKK F++++YPR +R  K  EF+ L QG MTV EYE+KY EL KYA+ +I DE ++CKRFE+G R+EIRT VT   +W +
Subjt:  DWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYRYEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTE

Query:  SGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSISR
          +LVE A+R+EKS++ERK  R+ SK      +S+ R
Subjt:  SGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSISR

A0A5D3CTK6 CCHC-type domain-containing protein4.1e-5151.49Show/hide
Query:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR
        +++P+K Y IERL  LGA  F G T+NP D E W+  +EKC  V  CPED+KV LA FLL+  A DWW++  SRR  +  I+W+EFKK F++++YPR +R
Subjt:  KNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNEFKKVFYERYYPRPYR

Query:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI
          K+ EFL L QG+MTV EYE+KY EL KYA+ +I DEV++ KRFE+G R+EIRT VT   +W +  +LVEAA+R+ KS++ERK  R+ SK      +S+
Subjt:  YEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKPPRKQSKRQHQHDTSI

Query:  SR
         R
Subjt:  SR

A0A5D3DI38 Reverse transcriptase1.7e-4949.77Show/hide
Query:  ANIALAVAEG-IRMFKNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNE
        +N A   A G IR  ++NPEK Y I+RL  LGA  F G T+NP DAE  +  +EKC  V  CPED+KV LA+FLL+  A  WW +  SRR  ++ ++W+E
Subjt:  ANIALAVAEG-IRMFKNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVTSRRSDSQVITWNE

Query:  FKKVFYERYYPRPYRYEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKP
        FKK F++++YP  +R  K+ EFL L QG+MTVVEYE+KY EL KYA+ +I DEV++CKRFE+G + EI T VT   +W +  +LVEAA+R++KS++ERK 
Subjt:  FKKVFYERYYPRPYRYEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTG-LEWTESGRLVEAAMRIEKSISERKP

Query:  PRKQSKRQHQHDTSISR
         R+ SK      +S+ R
Subjt:  PRKQSKRQHQHDTSISR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGGGAGACTAGTCATTCAAAAGAGGAGCAACAGGAGGATGTACATGATAAAGAGAGGCGGTTGATGGCAAATATTGCTCTTGCTGTAGCTGAGGGGATAAGGAT
GTTCAAGAATAATCCTGAGAAAAACTATAGGATTGAGCGATTGATAGGATTGGGAGCAAATCCATTTACTGGGATGACATCGAATCCAGCTGATGCAGAAATTTGGATGG
GTAAGTTAGAGAAGTGTTTAGAAGTAATGGAATGTCCAGAAGATAAAAAGGTAAGCCTTGCTACATTCCTGTTAAAGGAAGCAGCTCGGGATTGGTGGAAGCTCGTTACG
AGTAGGCGATCAGATTCTCAGGTGATTACTTGGAATGAATTCAAGAAAGTTTTCTATGAGCGCTATTATCCACGACCATACAGGTATGAGAAGCAGAAGGAATTTCTGAA
TTTGGAGCAAGGAGCAATGACAGTTGTTGAGTATGAAAGAAAGTATCTTGAGCTTTTTAAATATGCCTCCACCATAATTAGAGATGAGGTTGATAAGTGTAAAAGATTTG
AAGACGGTTTTCGTGACGAAATTCGAACTCATGTTACAGGGTTAGAATGGACAGAGTCTGGAAGATTAGTTGAAGCGGCAATGAGGATTGAAAAGAGTATATCAGAAAGG
AAACCTCCAAGAAAACAATCAAAGAGGCAACATCAACATGATACCTCAATCAGCAGAGCTGGTATGGAATATCATCCACGATCGTACATGTACGAGAAACAAAAGGAATT
TCTGAACTTGGAGCAAGGAGCAATGACAGTTGCTGAATATCAAAGAAAGTATATTGAGCTTTCCAAATATGCCACCAGCATACTTGAAGATGAGATCGATAAGTGTAAAA
GGTTTGAAGATGGTCTACGCGAGGAAATTGGAACTCATGTTACTACGTCAGAATGGAAAGAATTCGGAAGATTAGTTGAAGCGGCGATGAGGGTTGAGAAGAGTATATCA
GAAAGGAAGAGTGAATACGACACCTCGATTGGCACAACCAGTACTTCAAATCTCAAGCAATCGAGGAATATAGTTTCGATTGAAGGACCCATAAGTGAGTGGGATGAAGA
AGGCAGGGCACATGAGGAGGGATTGTCCATTGTTGATGTAAAGGGGCAATTGGGTTGTTTTCTGAAGCAGAGTAACCAGGAGTACATGTTGGGGAGAGGCAATCATTTGT
ACAAACAAGACCAATTTGTGACAAGTCTTGCACTTAGGAAAAAGTGTTTGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGGGAGACTAGTCATTCAAAAGAGGAGCAACAGGAGGATGTACATGATAAAGAGAGGCGGTTGATGGCAAATATTGCTCTTGCTGTAGCTGAGGGGATAAGGAT
GTTCAAGAATAATCCTGAGAAAAACTATAGGATTGAGCGATTGATAGGATTGGGAGCAAATCCATTTACTGGGATGACATCGAATCCAGCTGATGCAGAAATTTGGATGG
GTAAGTTAGAGAAGTGTTTAGAAGTAATGGAATGTCCAGAAGATAAAAAGGTAAGCCTTGCTACATTCCTGTTAAAGGAAGCAGCTCGGGATTGGTGGAAGCTCGTTACG
AGTAGGCGATCAGATTCTCAGGTGATTACTTGGAATGAATTCAAGAAAGTTTTCTATGAGCGCTATTATCCACGACCATACAGGTATGAGAAGCAGAAGGAATTTCTGAA
TTTGGAGCAAGGAGCAATGACAGTTGTTGAGTATGAAAGAAAGTATCTTGAGCTTTTTAAATATGCCTCCACCATAATTAGAGATGAGGTTGATAAGTGTAAAAGATTTG
AAGACGGTTTTCGTGACGAAATTCGAACTCATGTTACAGGGTTAGAATGGACAGAGTCTGGAAGATTAGTTGAAGCGGCAATGAGGATTGAAAAGAGTATATCAGAAAGG
AAACCTCCAAGAAAACAATCAAAGAGGCAACATCAACATGATACCTCAATCAGCAGAGCTGGTATGGAATATCATCCACGATCGTACATGTACGAGAAACAAAAGGAATT
TCTGAACTTGGAGCAAGGAGCAATGACAGTTGCTGAATATCAAAGAAAGTATATTGAGCTTTCCAAATATGCCACCAGCATACTTGAAGATGAGATCGATAAGTGTAAAA
GGTTTGAAGATGGTCTACGCGAGGAAATTGGAACTCATGTTACTACGTCAGAATGGAAAGAATTCGGAAGATTAGTTGAAGCGGCGATGAGGGTTGAGAAGAGTATATCA
GAAAGGAAGAGTGAATACGACACCTCGATTGGCACAACCAGTACTTCAAATCTCAAGCAATCGAGGAATATAGTTTCGATTGAAGGACCCATAAGTGAGTGGGATGAAGA
AGGCAGGGCACATGAGGAGGGATTGTCCATTGTTGATGTAAAGGGGCAATTGGGTTGTTTTCTGAAGCAGAGTAACCAGGAGTACATGTTGGGGAGAGGCAATCATTTGT
ACAAACAAGACCAATTTGTGACAAGTCTTGCACTTAGGAAAAAGTGTTTGCTATGA
Protein sequenceShow/hide protein sequence
MVGETSHSKEEQQEDVHDKERRLMANIALAVAEGIRMFKNNPEKNYRIERLIGLGANPFTGMTSNPADAEIWMGKLEKCLEVMECPEDKKVSLATFLLKEAARDWWKLVT
SRRSDSQVITWNEFKKVFYERYYPRPYRYEKQKEFLNLEQGAMTVVEYERKYLELFKYASTIIRDEVDKCKRFEDGFRDEIRTHVTGLEWTESGRLVEAAMRIEKSISER
KPPRKQSKRQHQHDTSISRAGMEYHPRSYMYEKQKEFLNLEQGAMTVAEYQRKYIELSKYATSILEDEIDKCKRFEDGLREEIGTHVTTSEWKEFGRLVEAAMRVEKSIS
ERKSEYDTSIGTTSTSNLKQSRNIVSIEGPISEWDEEGRAHEEGLSIVDVKGQLGCFLKQSNQEYMLGRGNHLYKQDQFVTSLALRKKCLL