; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004431 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004431
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription initiation factor IIF subunit beta
Genome locationchr6:3789396..3796607
RNA-Seq ExpressionLag0004431
SyntenyLag0004431
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006413 - translational initiation (biological process)
GO:0005674 - transcription factor TFIIF complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR003196 - Transcription initiation factor IIF, beta subunit
IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040450 - TFIIF beta subunit, HTH domain
IPR040504 - TFIIF, beta subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152667.1 transcription initiation factor IIF subunit beta [Cucumis sativus]1.3e-13997.31Show/hide
Query:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHG GGS SNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

XP_008444765.1 PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo]3.5e-14097.31Show/hide
Query:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HG GGS SNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

XP_022144312.1 transcription initiation factor IIF subunit beta [Momordica charantia]1.7e-13997.31Show/hide
Query:  MEDEH-GGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEH GGGS SNLDTGKADRSVWLMKCPLLVAKSWQSHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEH-GGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

XP_023002475.1 transcription initiation factor IIF subunit beta [Cucurbita maxima]2.3e-13996.14Show/hide
Query:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        MEDE+GGGS SNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
Subjt:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
        QGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKL
Subjt:  QGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

XP_038884084.1 transcription initiation factor IIF subunit beta-like [Benincasa hispida]9.3e-14197.3Show/hide
Query:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        MEDE+GGGS SNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
Subjt:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
        QGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
Subjt:  QGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

TrEMBL top hitse value%identityAlignment
A0A0A0LRL0 Transcription initiation factor IIF subunit beta6.5e-14097.31Show/hide
Query:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHG GGS SNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

A0A1S3BBV5 Transcription initiation factor IIF subunit beta1.7e-14097.31Show/hide
Query:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HG GGS SNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

A0A5A7VAJ9 Transcription initiation factor IIF subunit beta1.7e-14097.31Show/hide
Query:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HG GGS SNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHG-GGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

A0A6J1CTB7 Transcription initiation factor IIF subunit beta8.5e-14097.31Show/hide
Query:  MEDEH-GGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEH GGGS SNLDTGKADRSVWLMKCPLLVAKSWQSHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEH-GGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

A0A6J1KP21 Transcription initiation factor IIF subunit beta1.1e-13996.14Show/hide
Query:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        MEDE+GGGS SNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
Subjt:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
        QGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GLIS+TSK+K+KVAPVKQ +VKRTRRDRGELEDIMFKL
Subjt:  QGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

SwissProt top hitse value%identityAlignment
O94424 Transcription initiation factor IIF subunit beta2.0e-2131.44Show/hide
Query:  EDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE--
        ED+       +LD G+    VWL+K P  +   W S P  D   L  V +  D +Q    +S          E  +VPK ++L +   FV    VF E  
Subjt:  EDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE--

Query:  --ASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLIS-TTSKEKKKVAPVKQSDVKRTRRDRGELED
          +S    ++ G V H+ ++ P     + Y ++ ++R   +    R++Q+ID DRG  +   PG +G  S +T+   + V P     +K +R  R EL D
Subjt:  --ASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLIS-TTSKEKKKVAPVKQSDVKRTRRDRGELED

Query:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE
        I+FK FE    W LK L +   QP  +LKE+L+ + + NKRG     Y LKPEYK +++    E
Subjt:  IMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE

P41900 General transcription factor IIF subunit 21.1e-1627.69Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPS----------DPLPLAKVILSLDP----LQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVP-----
        +LD   A R VWL+K P  +A+ W+  P +           P   A+V LSL P    L  +E    +  ++++      V K  +L +F    P     
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPS----------DPLPLAKVILSLDP----LQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVP-----

Query:  --MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDR
              ++    K+ MEG++  K + +P ++N   Y KL  E   K+    R++Q ID    +     P      +   +E+KK      ++ K+ R D+
Subjt:  --MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDR

Query:  GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
          + D++F  FE+   + +K LV+ T+QP  +LKEIL ++C YN +  ++  +ELK EY+
Subjt:  GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q01750 General transcription factor IIF subunit 26.7e-1729.15Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        +S+EG V  + + +P +   E Y KL R +  +S    R  Q  D     + +P+      I    K+K+        D KR R D+  + D++F  FE+
Subjt:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
           + LK LV  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Subjt:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q2T9L9 General transcription factor IIF subunit 26.7e-1729.25Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        +S+EG V  + + +P +   E Y +L R +  +S    R  Q +D     + +P+      I    K+K+        D KR R D+  + D++F  FE+
Subjt:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK-SVEE
           + LK LV  T QP  +LK+IL E+ V N +G ++ T+ELKPEY+   VEE
Subjt:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK-SVEE

Q54KT7 General transcription factor IIF subunit 23.9e-1727.6Show/hide
Query:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS
        M +E        ++T  AD  VWL+K P  +++SWQ         + +  +    ++  ++ SL +     G + G   +  +     D  P+ +FSE  
Subjt:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEAS

Query:  QGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL
         G +++EG +  + D+K   E+   Y  L + R  K   K R  QVID                +ST    +K     K+S  K+ +    E+ D++F  
Subjt:  QGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKL

Query:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
        F  + +  LK L   T+QP   LK IL ++C+ NKRG     YELKPE++
Subjt:  FERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Arabidopsis top hitse value%identityAlignment
AT1G75510.1 Transcription initiation factor IIF, beta subunit6.7e-9767.29Show/hide
Query:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSW--------QSHPPSD-PLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV
        MED H      NLD  K+DRS+WLMKCP++V K+W         S   SD P  +AK++  +DPL+ D  S  +FKM M G E GN+PK ++LNMF DFV
Subjt:  MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSW--------QSHPPSD-PLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV

Query:  PMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRG
        PM  FS+ +QG  + EGKV+HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHMRPMPGM+GL+S+ SKEK+K  PVKQ++VKRTRRDRG
Subjt:  PMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRG

Query:  ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-ETGGE
        ELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS E +TGG+
Subjt:  ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-ETGGE

AT3G52270.1 Transcription initiation factor IIF, beta subunit3.0e-8160.96Show/hide
Query:  LDTGKADRSVWLMKCPLLVAKSWQSHP-------PSDPL-PLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKV
        L+TG A+RS+ LMK P LVA S QSH        P DP  P AKVIL +DPL + E    QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S GK+
Subjt:  LDTGKADRSVWLMKCPLLVAKSWQSHP-------PSDPL-PLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKV

Query:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ
        S+EGK+++KFDM+PH+EN+E YG+LCRERTNK M KNRQIQVIDN RG+HMRPMPGMI  I T + EKKK+   + S++KRTRRDR E+E++MF LFERQ
Subjt:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ

Query:  PNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEE
         NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYELKPEYKK+ +E
Subjt:  PNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACGAGCACGGCGGCGGTAGTGGCAGTAACTTGGATACAGGGAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTGGTCGCCAAGTCATGGCAGTC
TCATCCTCCATCCGATCCTCTTCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTTCAATCCGACGAGTCCTCTTCTCTCCAGTTTAAGATGGAGATGGCTGGAACTG
AGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTCGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGTAAGGTGTCAATGGAAGGGAAAGTG
GAACATAAGTTTGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAATCCATGGTTAAGAATAGACAAATTCAAGTGAT
AGACAACGACCGTGGAGTGCATATGAGGCCAATGCCTGGCATGATTGGTTTGATCAGTACAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTAA
AAAGAACTAGAAGGGATCGTGGGGAACTGGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCC
CAATTCTTGAAAGAGATACTGAATGAGCTTTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACCTATGAGCTTAAACCCGAATACAAGAAATCTGTTGAGGAAACCGG
CGGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGACGAGCACGGCGGCGGTAGTGGCAGTAACTTGGATACAGGGAAGGCGGATAGATCAGTGTGGCTGATGAAGTGCCCGTTGCTGGTCGCCAAGTCATGGCAGTC
TCATCCTCCATCCGATCCTCTTCCTCTCGCTAAGGTCATCCTTTCTCTCGATCCTCTTCAATCCGACGAGTCCTCTTCTCTCCAGTTTAAGATGGAGATGGCTGGAACTG
AGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTCGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGTAAGGTGTCAATGGAAGGGAAAGTG
GAACATAAGTTTGATATGAAGCCTCATAGTGAAAATCTTGAAATGTATGGGAAATTGTGCCGTGAAAGGACAAACAAATCCATGGTTAAGAATAGACAAATTCAAGTGAT
AGACAACGACCGTGGAGTGCATATGAGGCCAATGCCTGGCATGATTGGTTTGATCAGTACAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTAA
AAAGAACTAGAAGGGATCGTGGGGAACTGGAAGATATAATGTTCAAGCTATTTGAAAGACAGCCGAATTGGGCCCTAAAGCAGCTAGTCCAAGAGACTGATCAACCTGCC
CAATTCTTGAAAGAGATACTGAATGAGCTTTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACCTATGAGCTTAAACCCGAATACAAGAAATCTGTTGAGGAAACCGG
CGGAGAGTAG
Protein sequenceShow/hide protein sequence
MEDEHGGGSGSNLDTGKADRSVWLMKCPLLVAKSWQSHPPSDPLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKV
EHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLISTTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPA
QFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEETGGE