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Lag0004515 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004515
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:4539568..4540169
RNA-Seq ExpressionLag0004515
SyntenyLag0004515
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]1.1e-0640.74Show/hide
Query:  VDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAA
        VDTLEA+A+ + L LA+     ++EVE DSA+V  LL  +  D S +G ++ +I ++++  NF +F W RR  N +AH  A
Subjt:  VDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAA

XP_023915286.1 uncharacterized protein LOC112026812 [Quercus suber]2.9e-0727.81Show/hide
Query:  MCWWIWNKRNKELF-QIGDKEGCADGGWNW-------------ISEYLAHFRAFQASKGTASR----------------GTRFEDEGSSDMLTVARHTPF
        +CW +W++RN+ +F  +  + G   G                 I E LAH + +Q   G+  +                G    +     M  ++   P 
Subjt:  MCWWIWNKRNKELF-QIGDKEGCADGGWNW-------------ISEYLAHFRAFQASKGTASR----------------GTRFEDEGSSDMLTVARHTPF

Query:  VRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMA
        V D D  E +A R  L  A +A F  L VE D+  V+  +     D S +G+LV +++ +A  L    F   RRSAN VAH+ AR A
Subjt:  VRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMA

XP_023920779.1 uncharacterized protein LOC112032247 [Quercus suber]2.9e-0728.57Show/hide
Query:  WWIWNKRNKELFQIGDKEGCADGGW--NWISEYLAHFRAFQ--------------------------------ASKGTASRGTRFEDEGSSDMLTVARHT
        W IWN+RN  +F  G K    D  W   W  E+L  FR  Q                                +    +  G    ++    M  ++   
Subjt:  WWIWNKRNKELFQIGDKEGCADGGW--NWISEYLAHFRAFQ--------------------------------ASKGTASRGTRFEDEGSSDMLTVARHT

Query:  PFVRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMA--LDEDL
        P V D    E +A R ++  AR+A FT L VE D+  V+  L     D S +G ++ +IK +A      +FS+ RR+AN VAH  AR A  + ED+
Subjt:  PFVRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMA--LDEDL

XP_024169749.1 uncharacterized protein LOC112176157 [Rosa chinensis]3.3e-0626.9Show/hide
Query:  WWIWNKRNKELFQIGDKEGCADGGWN------WISEYLAHFRAFQASKGTASR-------------------------------GTRFEDEGSSDMLTVA
        W +W++RN  +++        DG +N      W+S  L  ++ F+   G   R                               G    +E    M  +A
Subjt:  WWIWNKRNKELFQIGDKEGCADGGWN------WISEYLAHFRAFQASKGTASR-------------------------------GTRFEDEGSSDMLTVA

Query:  RHTPFVRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMALDEDL
        R  PFV+     EA A+R SL +A    +  +EVE+D A +V  L  E+E +SE+G +V + K+ AN      F    R  N VA+  A  A   DL
Subjt:  RHTPFVRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMALDEDL

XP_030969974.1 uncharacterized protein LOC115990267 [Quercus lobata]1.9e-0632.26Show/hide
Query:  VRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMALDEDLK
        V+D + +EA+AIR ++  A +  F  + +E+DS  VV  ++   E    +G+++ ++K ++  +  C F   +R AN VAHT AR A+  D++
Subjt:  VRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMALDEDLK

TrEMBL top hitse value%identityAlignment
A0A2N9H4E7 Uncharacterized protein9.2e-0729.11Show/hide
Query:  CWWIWNKRNKELFQIGDKEGCADGGWNWISEYL-AHFRAFQASKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTSLEVE
        CW IW  RNK++F+          GW   ++ + A  +       TA  G    +     M T+    P + D+   E  A+   L LA  +  T L VE
Subjt:  CWWIWNKRNKELFQIGDKEGCADGGWNWISEYL-AHFRAFQASKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTSLEVE

Query:  TDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMAL
         DS  ++  L+ +  ++S +G+ V+E + +  +L     S   R ANMVAH  A+ AL
Subjt:  TDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMAL

A0A2N9HNU9 Uncharacterized protein9.2e-0728.57Show/hide
Query:  MCWWIWNKRNKELF--QIGDKEGCADGGWNWISEYLAHFRAFQASKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTSLE
        M W +WN+RNK L+  ++   E       +  SEYL        S      G    D     +  + +    +  VD  EA+A R++L  A +   T  E
Subjt:  MCWWIWNKRNKELF--QIGDKEGCADGGWNWISEYLAHFRAFQASKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTSLE

Query:  VETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMALD
         E DS  +   LR + +  +  G ++ E    A+ L+ C+FS  +   N VAH  AR A D
Subjt:  VETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMALD

A0A2N9I239 RNase H domain-containing protein7.1e-0729.01Show/hide
Query:  WWIWNKRNKELFQIGDKEGCADGGWNWISEYLAHFRA------FQASKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTS
        +W  N + + + Q+  K+        W    L  F+A      F A   T S G    D     + T+ +    +  VD  EA+A+R+++ LAR      
Subjt:  WWIWNKRNKELFQIGDKEGCADGGWNWISEYLAHFRA------FQASKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTS

Query:  LEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMAL
        +EVE DS  +   L+ + E  +  G ++ +I Q+A  L+   FS  RR+ N VAH  AR A+
Subjt:  LEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMAL

A0A2N9I609 Uncharacterized protein2.7e-0633.9Show/hide
Query:  SKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDI--SEVGSLVSEIKQIANELNFCTFS
        S  T S G    D     ++T+ +H   + DVD  EA+A+ +++ LAR    T +EVE DS  +V    LE +D+  +  G ++ ++ Q+A+ L+   FS
Subjt:  SKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALLRLELEDI--SEVGSLVSEIKQIANELNFCTFS

Query:  WCRRSANMVAHTAARMAL
           R +N VAH  AR  L
Subjt:  WCRRSANMVAHTAARMAL

A0A2N9IFR8 RNase H domain-containing protein7.1e-0729.01Show/hide
Query:  WWIWNKRNKELFQIGDKEGCADGGWNWISEYLAHFRA------FQASKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTS
        +W  N + + + Q+  K+        W    L  F+A      F A   T S G    D     + T+ +    +  VD  EA+A+R+++ LAR      
Subjt:  WWIWNKRNKELFQIGDKEGCADGGWNWISEYLAHFRA------FQASKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTS

Query:  LEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMAL
        +EVE DS  +   L+ + E  +  G ++ +I Q+A  L+   FS  RR+ N VAH  AR A+
Subjt:  LEVETDSARVVALLRLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTGGTGGATCTGGAATAAGAGAAATAAGGAATTGTTTCAAATCGGAGATAAAGAGGGTTGTGCTGATGGAGGGTGGAATTGGATCTCAGAATATCTTGCCCATTT
TAGGGCTTTTCAAGCGAGTAAGGGGACTGCAAGTAGAGGAACCAGATTTGAAGATGAAGGGTCAAGTGATATGCTTACTGTTGCGCGGCATACCCCTTTTGTGCGTGATG
TGGATACGCTTGAGGCTATGGCAATCAGAGACAGTTTGCATCTGGCAAGACAAGCTGAATTCACGTCCTTGGAAGTGGAGACGGACTCTGCCCGAGTGGTGGCGCTACTC
CGATTGGAACTAGAAGACATTTCAGAAGTTGGTTCGCTGGTGTCAGAAATAAAACAAATTGCAAATGAGTTGAACTTTTGTACCTTCTCGTGGTGTCGTCGTTCGGCAAA
CATGGTGGCCCATACTGCTGCGAGAATGGCCTTAGATGAAGATCTTAAAGGCATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCTGGTGGATCTGGAATAAGAGAAATAAGGAATTGTTTCAAATCGGAGATAAAGAGGGTTGTGCTGATGGAGGGTGGAATTGGATCTCAGAATATCTTGCCCATTT
TAGGGCTTTTCAAGCGAGTAAGGGGACTGCAAGTAGAGGAACCAGATTTGAAGATGAAGGGTCAAGTGATATGCTTACTGTTGCGCGGCATACCCCTTTTGTGCGTGATG
TGGATACGCTTGAGGCTATGGCAATCAGAGACAGTTTGCATCTGGCAAGACAAGCTGAATTCACGTCCTTGGAAGTGGAGACGGACTCTGCCCGAGTGGTGGCGCTACTC
CGATTGGAACTAGAAGACATTTCAGAAGTTGGTTCGCTGGTGTCAGAAATAAAACAAATTGCAAATGAGTTGAACTTTTGTACCTTCTCGTGGTGTCGTCGTTCGGCAAA
CATGGTGGCCCATACTGCTGCGAGAATGGCCTTAGATGAAGATCTTAAAGGCATTTAG
Protein sequenceShow/hide protein sequence
MCWWIWNKRNKELFQIGDKEGCADGGWNWISEYLAHFRAFQASKGTASRGTRFEDEGSSDMLTVARHTPFVRDVDTLEAMAIRDSLHLARQAEFTSLEVETDSARVVALL
RLELEDISEVGSLVSEIKQIANELNFCTFSWCRRSANMVAHTAARMALDEDLKGI