CuGenDBv2

Gene ID	Lag0004585
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA ligase
Genome location	chr6:5247285..5247695
RNA-Seq Expression	Lag0004585
Synteny	Lag0004585
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008445585.1 PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]

2.0e-33

64.96

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Query:  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDEFPFRDFTARLPPAIKER
        S CCFH          PS TP  SPCSWLKSTA E   LL RCRY +AR+ R R  YL S DFSYDSSSYALNF+DDCRDD +FPFRDFTAR PP +K+R
Subjt:  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDEFPFRDFTARLPPAIKER

Query:  VPAA-KFAGSQDGITIS
        +PAA KFAGS   I IS
Subjt:  VPAA-KFAGSQDGITIS

XP_022131639.1 uncharacterized protein LOC111004768 [Momordica charantia]

6.3e-40

69.34

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCRDDD
        MLADFH SSS AHKLKSSI CF  S+       PS   T+SPCSW KSTA+EFP+LLDRCRYLVARIGRG R+RY  S DF+YDSSSYALNFEDD R DD
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCRDDD

Query:  EFPFRDFTARLPPAIKERVPAAKFAGSQDGI-TISAC
        EFP R+F ARLP     R+PAAKFAGSQ G+ T++AC
Subjt:  EFPFRDFTARLPPAIKERVPAAKFAGSQDGI-TISAC

XP_022962228.1 uncharacterized protein LOC111462741 [Cucurbita moschata]

1.5e-52

76.52

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PTRSPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDFSYDSSSYALNFEDDCR+DDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFR+FTAR PP IKERVPAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

XP_022997531.1 uncharacterized protein LOC111492424 [Cucurbita maxima]

1.2e-51

74.24

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PT+SPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDF+YDSSSYALNF+DDCR+DDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFRDFTAR PP IKER PAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

XP_023546798.1 uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo]

7.2e-52

75.76

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PT SPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDFSYDSSSYALNFEDDCR+DDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFR+FTAR PP IKERVPAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BDX7 uncharacterized protein LOC103488565

9.5e-34

64.96

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Query:  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDEFPFRDFTARLPPAIKER
        S CCFH          PS TP  SPCSWLKSTA E   LL RCRY +AR+ R R  YL S DFSYDSSSYALNF+DDCRDD +FPFRDFTAR PP +K+R
Subjt:  SICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDEFPFRDFTARLPPAIKER

Query:  VPAA-KFAGSQDGITIS
        +PAA KFAGS   I IS
Subjt:  VPAA-KFAGSQDGITIS

A0A6J1BQU1 uncharacterized protein LOC111004768

3.1e-40

69.34

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCRDDD
        MLADFH SSS AHKLKSSI CF  S+       PS   T+SPCSW KSTA+EFP+LLDRCRYLVARIGRG R+RY  S DF+YDSSSYALNFEDD R DD
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRG-RKRYLGSVDFSYDSSSYALNFEDDCRDDD

Query:  EFPFRDFTARLPPAIKERVPAAKFAGSQDGI-TISAC
        EFP R+F ARLP     R+PAAKFAGSQ G+ T++AC
Subjt:  EFPFRDFTARLPPAIKERVPAAKFAGSQDGI-TISAC

A0A6J1FP70 uncharacterized protein LOC111446022

4.0e-24

56.8

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDD-CRDDD
        ML D+H   S   KLKSSI CF   +  DFL++   +  R+P S LKS A+EFPEL   CR LVARIGR R+RY  S DF YD SSYALNFED+  RDDD
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDD-CRDDD

Query:  EFPFRDFTARLP--PAIKERVPAAK
        EFP RDF +RLP  P    R+  AK
Subjt:  EFPFRDFTARLP--PAIKERVPAAK

A0A6J1HE78 uncharacterized protein LOC111462741

7.0e-53

76.52

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PTRSPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDFSYDSSSYALNFEDDCR+DDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFR+FTAR PP IKERVPAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

A0A6J1K7R1 uncharacterized protein LOC111492424

5.9e-52

74.24

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Query:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE
        ML  FH S + A KLKSS CCFHG + DDFL SPSK+PT+SPCSW KST  EF  +L RCRYL+ARI R RKRYL SVDF+YDSSSYALNF+DDCR+DDE
Subjt:  MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDE

Query:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI
        FPFRDFTAR PP IKER PAAKFAGS+DGI++
Subjt:  FPFRDFTARLPPAIKERVPAAKFAGSQDGITI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G11070.1 unknown protein

4.9e-14

40.94

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Query:  HKLKSSICCFHGS---EDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARI-----------------GRGRKRYLGSVDFSYDSSSYALNFE
        H+++S ICC   +   E +  +    +   RSP  WLKSTA E  EL DRCR + +RI                     + Y G  DFSYD  SYALNFE
Subjt:  HKLKSSICCFHGS---EDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARI-----------------GRGRKRYLGSVDFSYDSSSYALNFE

Query:  DDCRDDDEFPFRDFTARLP--PAIKER
        D+ R DD+  F +FTARLP  P  K R
Subjt:  DDCRDDDEFPFRDFTARLP--PAIKER

AT5G35090.1 unknown protein

1.4e-08

35.25

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Query:  SLAHKLKSSIC---CF-------HGSEDDDFLQSPSKT--PTRSP-CSWLKSTASEFPELL----DRCRYLVARI--------GRGRKRYLGSVDFSYDS
        SL  KLKS  C   CF       H +  DD   SP  T   T+SP    +K+ +      L    ++C+ L+ R+        G G+     + DF YD 
Subjt:  SLAHKLKSSIC---CF-------HGSEDDDFLQSPSKT--PTRSP-CSWLKSTASEFPELL----DRCRYLVARI--------GRGRKRYLGSVDFSYDS

Query:  SSYALNFEDDCRDD--DEFPFRDFTARLPPAIKERVPAA
        SSYALNF+    DD  D FP R+F+ARLP +      AA
Subjt:  SSYALNFEDDCRDD--DEFPFRDFTARLPPAIKERVPAA

Sequences

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CDS sequence

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ATGTTGGCTGATTTTCATCAGTCTTCTTCTCTCGCTCACAAGCTCAAGTCCTCCATCTGCTGTTTCCACGGTTCCGAAGATGATGATTTTCTCCAGTCTCCGTCCAAGAC
GCCGACGAGATCGCCGTGTTCCTGGTTGAAATCGACGGCCAGTGAATTCCCTGAGTTGCTCGACCGCTGCCGGTACCTGGTGGCTCGGATCGGTCGCGGCCGGAAGAGGT
ACCTTGGCTCCGTCGACTTTAGCTACGATTCTTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGATGACGATGAGTTTCCGTTCAGGGATTTTACGGCCAGATTG
CCGCCGGCGATCAAGGAGCGTGTTCCGGCGGCCAAATTTGCCGGATCTCAAGATGGAATTACGATTTCCGCTTGTGGATGA

mRNA sequence

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Protein sequence

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MLADFHQSSSLAHKLKSSICCFHGSEDDDFLQSPSKTPTRSPCSWLKSTASEFPELLDRCRYLVARIGRGRKRYLGSVDFSYDSSSYALNFEDDCRDDDEFPFRDFTARL
PPAIKERVPAAKFAGSQDGITISACG

Lag0004585 (gene) of Sponge gourd (AG-4) v1 genome