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Lag0004613 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004613
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:5453034..5453447
RNA-Seq ExpressionLag0004613
SyntenyLag0004613
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48608.1 hypothetical protein EZV62_024483 [Acer yangbiense]2.5e-0441.67Show/hide
Query:  INVLEATTIWEGLKMIIDPCYQNHTPIEVESDAMEVVNLLNGAGKNLLEVKPIIDAISILAARSQNVIFRFCRRELNTVAHCVS
        + V EA +I+EGL M ID       PI++ESDAM VVNL NG   +  +V  II  I  L  R + V   +  R  N VAH ++
Subjt:  INVLEATTIWEGLKMIIDPCYQNHTPIEVESDAMEVVNLLNGAGKNLLEVKPIIDAISILAARSQNVIFRFCRRELNTVAHCVS
TrEMBL top hitse value%identityAlignment
A0A5C7GV88 RNase H domain-containing protein1.2e-0441.67Show/hide
Query:  INVLEATTIWEGLKMIIDPCYQNHTPIEVESDAMEVVNLLNGAGKNLLEVKPIIDAISILAARSQNVIFRFCRRELNTVAHCVS
        + V EA +I+EGL M ID       PI++ESDAM VVNL NG   +  +V  II  I  L  R + V   +  R  N VAH ++
Subjt:  INVLEATTIWEGLKMIIDPCYQNHTPIEVESDAMEVVNLLNGAGKNLLEVKPIIDAISILAARSQNVIFRFCRRELNTVAHCVS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAGAATCAATAGGAAATGGCCCATTAATGTTCTGGAGGCAACAACTATATGGGAGGGGCTTAAAATGATAATAGATCCCTGCTATCAAAACCATACCCCTATTGA
AGTGGAATCAGACGCCATGGAAGTCGTCAACCTACTAAACGGAGCAGGCAAAAACCTTTTGGAGGTGAAACCCATCATCGATGCAATCTCTATCCTCGCTGCCCGCTCGC
AAAATGTAATCTTCAGATTTTGTAGAAGGGAATTGAACACAGTCGCCCACTGTGTTTCTAGGCTAGCTTGCGATTCCGATTTTATTGAGAATCAGGAGTCTTCCCCTTCG
TGGGAAACAAGGCTTCATTTTTGGGCTCTTCAGATTCCTTCATGGTTTTCCTTGTGCATTTATGAGGGTTGTTGTGACTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAAGAATCAATAGGAAATGGCCCATTAATGTTCTGGAGGCAACAACTATATGGGAGGGGCTTAAAATGATAATAGATCCCTGCTATCAAAACCATACCCCTATTGA
AGTGGAATCAGACGCCATGGAAGTCGTCAACCTACTAAACGGAGCAGGCAAAAACCTTTTGGAGGTGAAACCCATCATCGATGCAATCTCTATCCTCGCTGCCCGCTCGC
AAAATGTAATCTTCAGATTTTGTAGAAGGGAATTGAACACAGTCGCCCACTGTGTTTCTAGGCTAGCTTGCGATTCCGATTTTATTGAGAATCAGGAGTCTTCCCCTTCG
TGGGAAACAAGGCTTCATTTTTGGGCTCTTCAGATTCCTTCATGGTTTTCCTTGTGCATTTATGAGGGTTGTTGTGACTGTTAG
Protein sequenceShow/hide protein sequence
MRRINRKWPINVLEATTIWEGLKMIIDPCYQNHTPIEVESDAMEVVNLLNGAGKNLLEVKPIIDAISILAARSQNVIFRFCRRELNTVAHCVSRLACDSDFIENQESSPS
WETRLHFWALQIPSWFSLCIYEGCCDC