; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004616 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004616
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:5464143..5466478
RNA-Seq ExpressionLag0004616
SyntenyLag0004616
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5475420.1 hypothetical protein F2P56_007226, partial [Juglans regia]1.3e-1227.27Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN---------------------------------------------SQQGKRANSLLDENNA
        R+ +NP+S   K LK +YFK  +F  AK G +PS  WR+                                              ++ K A  +   + +
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN---------------------------------------------SQQGKRANSLLDENNA

Query:  WKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIW
        WK++L++Q F   +A+ I+RIPI     K+++ W     G FSV+S YH+  E +++ + Q S  G+  K+W+ IW
Subjt:  WKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIW

KAF5475845.1 hypothetical protein F2P56_007609 [Juglans regia]2.0e-1328.41Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN---------------------------------------------SQQGKRANSLLDENNA
        R+I+NP+S   K LK +YFK  +F  AK G +PS  WR+                                              ++ K A+ +   + +
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN---------------------------------------------SQQGKRANSLLDENNA

Query:  WKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIW
        WK+ L++Q F   +A+ I+RIPI     K+++ W    KG FSV+S YH+  E +++ + Q S  G+  K+W+ IW
Subjt:  WKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIW

XP_035544642.1 uncharacterized protein LOC109020982 [Juglans regia]2.0e-1328.41Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN---------------------------------------------SQQGKRANSLLDENNA
        R+I+NP+S   K LK +YFK  +F  AK G +PS  WR+                                              ++ K A+ +   + +
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN---------------------------------------------SQQGKRANSLLDENNA

Query:  WKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIW
        WK+ L++Q F   +A+ I+RIPI     K+++ W    KG FSV+S YH+  E +++ + Q S  G+  K+W+ IW
Subjt:  WKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIW

XP_042939580.1 uncharacterized protein LOC122274622 [Carya illinoinensis]1.5e-1332.24Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPS--LTWRNSQQG------KRANSLLD-----------ENNAWKKKLISQAFGPQDAKDILRIPIGDK
        RI++ P S + +  K +YFK GN +EA+ G  PS  L   N   G      +  N +LD           E+  WK++L+   F  ++AK I  IPI  K
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPS--LTWRNSQQG------KRANSLLD-----------ENNAWKKKLISQAFGPQDAKDILRIPIGDK

Query:  TLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL
         + N++ W   +KG FS+KS Y+  +E    K  + S   ++ +LW+ +W L
Subjt:  TLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL

XP_042954551.1 uncharacterized protein LOC122290956 [Carya illinoinensis]3.1e-1433.33Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN-------SQQGKRANSLLDEN-NAWKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPD
        R++ N  S   K LK +YF  G+FL AK   + S  W++         +G   NSL+D++ ++W   LI + F P++A  I ++ +   +  +++TW   
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN-------SQQGKRANSLLDEN-NAWKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPD

Query:  KKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL
          G FSVKS YHL +  N S+  Q S       LWK +W L
Subjt:  KKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL

TrEMBL top hitse value%identityAlignment
A0A2N9I4C9 Uncharacterized protein8.1e-1330.32Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRNSQQGK---------------------RANSLLD-ENNAWKKKLISQAFGPQDAKDILRIPI
        R+++NPN+ LH+ LK +YF D +F+EAK  +  S +WR+  Q K                     + + L+D E + WK+ LI   F P++A  I  IP+
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRNSQQGK---------------------RANSLLD-ENNAWKKKLISQAFGPQDAKDILRIPI

Query:  GDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL
           + ++ + W     G F+ +S YH+  E         S+ G+    WK+IWS+
Subjt:  GDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL

A0A2Z6NFW5 Uncharacterized protein4.0e-1229.69Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRNSQQG----KR------ANSLLD-ENNAWKKKLISQAFGPQDAKDILRIPIGDKTLKNEITW
        RI+  P + L +TLK +YF    FL+ K GN  S  W++ Q+     KR         L+D  +N W  +LI+Q F P +A  IL IP+     ++   W
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRNSQQG----KR------ANSLLD-ENNAWKKKLISQAFGPQDAKDILRIPIGDKTLKNEITW

Query:  DPDKKGKFSVKSTYHLGI--ENNYSKEAQQSDIGKSSKLWKSIWSLGERVGDGGLLELDRGDLDQGGHSKRNHYYVEHMEYKKQSINNKNLP
           K G ++V+S YH  +  E++ S++AQ S+   +S+ W+ +W           LE+        G S    +++     +K ++NNK++P
Subjt:  DPDKKGKFSVKSTYHLGI--ENNYSKEAQQSDIGKSSKLWKSIWSLGERVGDGGLLELDRGDLDQGGHSKRNHYYVEHMEYKKQSINNKNLP

A0A6P9EQ08 uncharacterized protein LOC1090209829.6e-1428.41Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN---------------------------------------------SQQGKRANSLLDENNA
        R+I+NP+S   K LK +YFK  +F  AK G +PS  WR+                                              ++ K A+ +   + +
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRN---------------------------------------------SQQGKRANSLLDENNA

Query:  WKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIW
        WK+ L++Q F   +A+ I+RIPI     K+++ W    KG FSV+S YH+  E +++ + Q S  G+  K+W+ IW
Subjt:  WKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIW

A0A803QCJ3 Uncharacterized protein1.4e-1231.47Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTW----------RNSQQGKRANSLLDENNAWKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWD
        R+  NP S L   LK +YF+   FLEAK G++PS TW          +N  + K  +  +D+   W +  ++  F       IL++PIG     + + W+
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTW----------RNSQQGKRANSLLDENNAWKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWD

Query:  PDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL
         +  G FSV+S YHL   N+ S     S+    +  WK++W+L
Subjt:  PDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL

A0A803QI38 Uncharacterized protein1.1e-1231.43Show/hide
Query:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTW----------------------------------------RNSQQ--GKRANSLLDENNAWKK
        R++ NP S L   LK +YFK  NFLEAK G+ PS TW                                        R+S Q    + +  +D +  W +
Subjt:  RIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTW----------------------------------------RNSQQ--GKRANSLLDENNAWKK

Query:  KLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL
        + + Q F       IL+IPIG     + + W  D  G FSVKS YH  I NN S     SD   S   WK++W+L
Subjt:  KLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIENNYSKEAQQSDIGKSSKLWKSIWSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAGGATAATAAGAAACCCCAATAGCCATCTCCACAAAACTCTAAAGGGCAGATACTTTAAAGATGGGAACTTCCTAGAGGCCAAAACTGGAAATGCACCATCATT
AACATGGAGAAATTCTCAGCAAGGGAAAAGAGCCAATAGTCTACTTGATGAGAACAATGCGTGGAAGAAAAAGCTTATATCTCAAGCTTTTGGACCTCAAGACGCGAAAG
ACATTCTTAGGATCCCCATCGGTGATAAGACCTTGAAAAATGAGATTACTTGGGATCCAGACAAAAAAGGTAAGTTTTCGGTCAAAAGCACTTACCACCTCGGTATTGAG
AACAACTATTCCAAAGAAGCTCAACAATCGGACATCGGCAAATCATCTAAACTATGGAAAAGCATTTGGTCTTTGGGGGAAAGAGTGGGCGATGGAGGATTATTGGAGTT
GGATCGTGGAGATTTGGATCAAGGAGGACATAGCAAAAGGAATCATTATTATGTGGAGCATATGGAATATAAGAAACAGAGCATCAACAACAAAAATCTCCCCAGCAGCC
GATTTCAGTATCAAAATCATAGAAGACAACATAAAGGAATGGGAAGATCTTTCGGAGTGGACGAATATCTTTCGAAGGTGAAACTCATCATCGATGCAATCTCTATCCTC
GCTGCTCGCTCGCAAAATGTAATCTTTAGATTTTGTAGAAGGGAATTGAACACAGTCGCCCACTTTGTTTCTAGGCTAGCTTGCCATTTTGATTTTATTGAGAATCAGGA
GTCTTCCCCTTCGTGGGAAACAGGGCTTCATTTTTGGGCTCCTGAGATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAAGACGAAGAGAA
AGGTCTATCTATTTTATTTAGTTATTCAGTTAAACCTCGCTCGCAAAATGAAAGAGTGGGCGATGGAGGATTATTGGAGTTGGATCGTGGAGATTTGGATCAAGGAGGAC
ATAGCAAAAGGAATCATTATTATGTGGAGCATATGGAATATAAGAAATAGAGCATCAACAACAAAAATCTCCCCAGCAGCCGATTTCAGTATCAAAATCATAGAAGACAA
CATAAAGGAATGGGAAGATCTTTCGGAGTGGACGAATATCTTTCGAAGGAGTCTTCCCCTTCGTGGGAAACAGGGCTTCATTTTTGGGCTCCTGAGATTCCTTCGTGGTT
TTCCTCGTGCATTTATGAGGGTTGTTGTGACTGTTGTTAGTTTTAATGGAAGTAGGGGTGTTCATCGATCGGTCGGAGTCAATTTTGGGCTAAAACCGACGTCGACCACC
GACAATACGGTCTGTCAGTTTTCGTTGTCATCGGTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAAGGATAATAAGAAACCCCAATAGCCATCTCCACAAAACTCTAAAGGGCAGATACTTTAAAGATGGGAACTTCCTAGAGGCCAAAACTGGAAATGCACCATCATT
AACATGGAGAAATTCTCAGCAAGGGAAAAGAGCCAATAGTCTACTTGATGAGAACAATGCGTGGAAGAAAAAGCTTATATCTCAAGCTTTTGGACCTCAAGACGCGAAAG
ACATTCTTAGGATCCCCATCGGTGATAAGACCTTGAAAAATGAGATTACTTGGGATCCAGACAAAAAAGGTAAGTTTTCGGTCAAAAGCACTTACCACCTCGGTATTGAG
AACAACTATTCCAAAGAAGCTCAACAATCGGACATCGGCAAATCATCTAAACTATGGAAAAGCATTTGGTCTTTGGGGGAAAGAGTGGGCGATGGAGGATTATTGGAGTT
GGATCGTGGAGATTTGGATCAAGGAGGACATAGCAAAAGGAATCATTATTATGTGGAGCATATGGAATATAAGAAACAGAGCATCAACAACAAAAATCTCCCCAGCAGCC
GATTTCAGTATCAAAATCATAGAAGACAACATAAAGGAATGGGAAGATCTTTCGGAGTGGACGAATATCTTTCGAAGGTGAAACTCATCATCGATGCAATCTCTATCCTC
GCTGCTCGCTCGCAAAATGTAATCTTTAGATTTTGTAGAAGGGAATTGAACACAGTCGCCCACTTTGTTTCTAGGCTAGCTTGCCATTTTGATTTTATTGAGAATCAGGA
GTCTTCCCCTTCGTGGGAAACAGGGCTTCATTTTTGGGCTCCTGAGATGTGTATTATCCATATAGGGGATCTTTCAATGGAGAAGATCCGTCGACCTAAGACGAAGAGAA
AGGTCTATCTATTTTATTTAGTTATTCAGTTAAACCTCGCTCGCAAAATGAAAGAGTGGGCGATGGAGGATTATTGGAGTTGGATCGTGGAGATTTGGATCAAGGAGGAC
ATAGCAAAAGGAATCATTATTATGTGGAGCATATGGAATATAAGAAATAGAGCATCAACAACAAAAATCTCCCCAGCAGCCGATTTCAGTATCAAAATCATAGAAGACAA
CATAAAGGAATGGGAAGATCTTTCGGAGTGGACGAATATCTTTCGAAGGAGTCTTCCCCTTCGTGGGAAACAGGGCTTCATTTTTGGGCTCCTGAGATTCCTTCGTGGTT
TTCCTCGTGCATTTATGAGGGTTGTTGTGACTGTTGTTAGTTTTAATGGAAGTAGGGGTGTTCATCGATCGGTCGGAGTCAATTTTGGGCTAAAACCGACGTCGACCACC
GACAATACGGTCTGTCAGTTTTCGTTGTCATCGGTTTTCTAG
Protein sequenceShow/hide protein sequence
MRRIIRNPNSHLHKTLKGRYFKDGNFLEAKTGNAPSLTWRNSQQGKRANSLLDENNAWKKKLISQAFGPQDAKDILRIPIGDKTLKNEITWDPDKKGKFSVKSTYHLGIE
NNYSKEAQQSDIGKSSKLWKSIWSLGERVGDGGLLELDRGDLDQGGHSKRNHYYVEHMEYKKQSINNKNLPSSRFQYQNHRRQHKGMGRSFGVDEYLSKVKLIIDAISIL
AARSQNVIFRFCRRELNTVAHFVSRLACHFDFIENQESSPSWETGLHFWAPEMCIIHIGDLSMEKIRRPKTKRKVYLFYLVIQLNLARKMKEWAMEDYWSWIVEIWIKED
IAKGIIIMWSIWNIRNRASTTKISPAADFSIKIIEDNIKEWEDLSEWTNIFRRSLPLRGKQGFIFGLLRFLRGFPRAFMRVVVTVVSFNGSRGVHRSVGVNFGLKPTSTT
DNTVCQFSLSSVF