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Lag0004661 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004661
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:5873735..5874428
RNA-Seq ExpressionLag0004661
SyntenyLag0004661
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_018822772.1 uncharacterized protein LOC108992627 [Juglans regia]6.2e-0734.34Show/hide
Query:  PLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHA-CWEGDALWFSQYPE
        P+E E  AV+ GL++   LG++ + VESD   ++  ++    S    G  V+ +  +  RF +V+ QH GR+ NA AHCLA+ + C +   +W+  +PE
Subjt:  PLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHA-CWEGDALWFSQYPE

XP_021727655.1 uncharacterized protein LOC110694792 [Chenopodium quinoa]2.1e-0739.77Show/hide
Query:  LPVSLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAK
        + +   PLEAEA+A++ GL LA   GL R+ VESDC  L+ M+ GS+       + V + ++L S F+   F    R+CN  AH +AK
Subjt:  LPVSLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAK

XP_021743206.1 uncharacterized protein LOC110709303 [Chenopodium quinoa]6.2e-0734.58Show/hide
Query:  SLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHA-CWEGDALWFSQY
        ++ P   EA AV+ GLK A   G   ++VESDCSN++ ++ G  V      + V +++ALAS F    F    R CN   H +AK A  +  D +W    
Subjt:  SLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHA-CWEGDALWFSQY

Query:  PEWYLLS
        P   ++S
Subjt:  PEWYLLS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.1e-0734.86Show/hide
Query:  LPVSLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDA--LW
        +P  L PL AE R ++EGLK A       + VESD    I +I   + +  ++  WV  + AL   F  + F H  R CN  AH LAK       A   W
Subjt:  LPVSLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDA--LW

Query:  FSQYPEWYL
           +P W L
Subjt:  FSQYPEWYL

XP_023914149.1 uncharacterized protein LOC112025707 [Quercus suber]4.7e-0738.74Show/hide
Query:  KVLPVSLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVF-----QHVGRVCNAPAHCLAKHACWE
        K +P  LGPLEAEARA  EG+ LA+ LGL  +++E D   +++ +  S +      I     V   ++F+   F     +HV R CN  AH LAKHAC  
Subjt:  KVLPVSLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVF-----QHVGRVCNAPAHCLAKHACWE

Query:  GDAL-WFSQYP
         D+L W    P
Subjt:  GDAL-WFSQYP

TrEMBL top hitse value%identityAlignment
A0A2I4E6U8 uncharacterized protein LOC1089868158.7e-0735.42Show/hide
Query:  EARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDA-LWFSQYPEW
        E+ AV+ GL+L   LG+ ++++E DC N++  +  +  S    G  + +   L  RFQ+V  QHV R+ N  AH LA+HA    D  +W+ Q P +
Subjt:  EARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDA-LWFSQYPEW

A0A2I4ETQ3 uncharacterized protein LOC1089926273.0e-0734.34Show/hide
Query:  PLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHA-CWEGDALWFSQYPE
        P+E E  AV+ GL++   LG++ + VESD   ++  ++    S    G  V+ +  +  RF +V+ QH GR+ NA AHCLA+ + C +   +W+  +PE
Subjt:  PLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHA-CWEGDALWFSQYPE

A0A2I4HUH1 uncharacterized protein LOC1090215801.5e-0635.42Show/hide
Query:  EARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDA-LWFSQYPEW
        E  A++ GL+    LG +RI++ESDC  L+  +     SF   G  ++ V  +   F +   QHV R+ N  AHCLA+HA    D  LW   +P++
Subjt:  EARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDA-LWFSQYPEW

A0A446RG53 RNase H domain-containing protein3.9e-0737.76Show/hide
Query:  PLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDALWFSQYPE
        P   EA A+   L  A+  G  +I+VE+DC++LI  I   +      G  V N+ + A RF    F HV R CN  AH LAK A  +  + WF+  PE
Subjt:  PLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDALWFSQYPE

A0A6J1DX30 uncharacterized protein LOC1110248743.9e-0734.86Show/hide
Query:  LPVSLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDA--LW
        +P  L PL AE R ++EGLK A       + VESD    I +I   + +  ++  WV  + AL   F  + F H  R CN  AH LAK       A   W
Subjt:  LPVSLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDA--LW

Query:  FSQYPEWYL
           +P W L
Subjt:  FSQYPEWYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTCTTCCAGTTTCACTTGGTCCGTTGGAAGCTGAGGCTCGGGCGGTGATTGAGGGGTTGAAGTTGGCTCAGTTGTTGGGTTTGGCGCGGATTGTGGTGGAATC
GGACTGTAGTAATCTCATTGCCATGATTCATGGGTCGCTGGTTTCGTTTAAAGAAGATGGTATCTGGGTGGCCAACGTTGTGGCTCTGGCCTCTCGGTTTCAACAGGTTG
TTTTTCAGCATGTTGGTCGCGTTTGCAATGCCCCAGCTCATTGTTTGGCGAAACACGCCTGTTGGGAGGGGGATGCATTATGGTTTTCTCAATATCCTGAGTGGTACCTG
TTGAGTGTTGGTGTGGTCAGATTACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTTCTTCCAGTTTCACTTGGTCCGTTGGAAGCTGAGGCTCGGGCGGTGATTGAGGGGTTGAAGTTGGCTCAGTTGTTGGGTTTGGCGCGGATTGTGGTGGAATC
GGACTGTAGTAATCTCATTGCCATGATTCATGGGTCGCTGGTTTCGTTTAAAGAAGATGGTATCTGGGTGGCCAACGTTGTGGCTCTGGCCTCTCGGTTTCAACAGGTTG
TTTTTCAGCATGTTGGTCGCGTTTGCAATGCCCCAGCTCATTGTTTGGCGAAACACGCCTGTTGGGAGGGGGATGCATTATGGTTTTCTCAATATCCTGAGTGGTACCTG
TTGAGTGTTGGTGTGGTCAGATTACAGTAG
Protein sequenceShow/hide protein sequence
MKVLPVSLGPLEAEARAVIEGLKLAQLLGLARIVVESDCSNLIAMIHGSLVSFKEDGIWVANVVALASRFQQVVFQHVGRVCNAPAHCLAKHACWEGDALWFSQYPEWYL
LSVGVVRLQ