; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004727 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004727
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionNuclear transcription factor Y subunit C
Genome locationchr6:6443750..6444172
RNA-Seq ExpressionLag0004727
SyntenyLag0004727
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]1.2e-5787.86Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALFIVSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP Q SDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES
        +KDENR R VVDK  P GTRRIDDFFRR  KTTSAETNES
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]1.7e-5686.43Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALF+VSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP Q SDA 
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES
        +KDENR R VVDK  P GTRRIDDFFRR  KTTSAETNES
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

XP_022132171.1 nuclear transcription factor Y subunit C-1 [Momordica charantia]6.5e-5684.29Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        MAEEESGE IRP+ PTGRVKKIMK+DKDV KVNSEALF+VSCAT+LFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHR ISDFLLDSLPLPPQ SDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES
        +K+ENR RT  DK  PEGTRRIDDFFR+ AKTTS E NES
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]8.5e-5683.57Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        MAEEE GE IRP+FP GR+KKIMK+DKD+GKVNSEALF+VSCATELFL+LLAEKSAEVA EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLP Q SDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES
        +KDENR R VVDK  PEGTRRIDDFFRR  KT SAETNE+
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

XP_038884228.1 NCT transcriptional regulatory complex subunit A [Benincasa hispida]3.7e-5988.57Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        MAEEESG+ IRP+FPTGRVKKIMK+DKD+ KVNSEALF+VSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLPPQ SDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES
        +KDENR RTVVDK  PEGTRRIDDFFRR AKTTSAE NES
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein1.2e-5586.13Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        M EEE GE IRP+FPTGRVKKIMK+DKD+GKVNSEALF+VSCATELFLKLLAEKSAE A EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP Q SDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAET
        +KDENR R VVDK  PEGTRRIDDFFRRS KT SAET
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAET

A0A1S3BDL4 dr1-associated corepressor8.3e-5786.43Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALF+VSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP Q SDA 
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES
        +KDENR R VVDK  P GTRRIDDFFRR  KTTSAETNES
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

A0A5A7VG98 Dr1-associated corepressor5.7e-5887.86Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        M EEESGE IRP+FPTGRVKKIMK+DKD+GKVNSEALFIVSCATELFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHRSISDFLLDSLPLP Q SDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES
        +KDENR R VVDK  P GTRRIDDFFRR  KTTSAETNES
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

A0A6J1BRI3 nuclear transcription factor Y subunit C-13.1e-5684.29Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        MAEEESGE IRP+ PTGRVKKIMK+DKDV KVNSEALF+VSCAT+LFLKLLAEKSAEVA EKKRKTVKLEHIR+AVKRHR ISDFLLDSLPLPPQ SDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES
        +K+ENR RT  DK  PEGTRRIDDFFR+ AKTTS E NES
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

A0A6J1K737 DNA polymerase epsilon subunit C4.1e-5683.57Show/hide
Query:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP
        MAEEE GE IRP+FP GR+KKIMK+DKD+GKVNSEALF+VSCATELFL+LLAEKSAEVA EKKRKTVKLEHIR+AVKRH+SISDFLLDSLPLP Q SDAP
Subjt:  MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAP

Query:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES
        +KDENR R VVDK  PEGTRRIDDFFRR  KT SAETNE+
Subjt:  SKDENRPRTVVDKGPPEGTRRIDDFFRRSAKTTSAETNES

SwissProt top hitse value%identityAlignment
A0JPP1 Dr1-associated corepressor4.4e-0733.33Show/hide
Query:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVD
        +FP  R+KKIM+ D+++GKV +    I+S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D +   P        D     T  D
Subjt:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVD

Query:  KGPPEGTR
        KGP  G +
Subjt:  KGPPEGTR

B0XTT5 NCT transcriptional regulatory complex subunit A2.9e-0635.05Show/hide
Query:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSL-PLPPQTSDAPSKDEN
        ++ +FP  R+K+IM+ D+DVGKV       VS A ELF+  L  K+A+ A ++  K V   H++ AV +   + DFL D +  +P Q +     D++
Subjt:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSL-PLPPQTSDAPSKDEN

Q14919 Dr1-associated corepressor2.9e-0635.37Show/hide
Query:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP
        +FP  R+KKIM+ D+++GKV +    I+S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D +   P
Subjt:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP

Q2YDP3 Dr1-associated corepressor2.2e-0632.41Show/hide
Query:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVD
        +FP  R+KKIM+ D+++GKV +    I+S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D +   P        D        D
Subjt:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVD

Query:  KGPPEGTR
        KGP  G +
Subjt:  KGPPEGTR

Q9D6N5 Dr1-associated corepressor1.7e-0632.41Show/hide
Query:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVD
        +FP  R+KKIM+ D+++GKV +    I+S A ELFL+ L +K+ +V   +  KT+   H++  ++  +   DFL D +   P        D        D
Subjt:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTVVD

Query:  KGPPEGTR
        KGP  G +
Subjt:  KGPPEGTR

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C102.7e-0730.77Show/hide
Query:  EEESG--EVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLP
        EE+ G  E  + +FP  R+++IM+ D    ++  +A+F+V+ ATE+F++  +E++ + +V+ K+K +  +H+   V   +   +FL DS+P
Subjt:  EEESG--EVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLP

AT3G12480.1 nuclear factor Y, subunit C112.4e-0837.8Show/hide
Query:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP
        +FP  R+KKIM+ D+DVGK+      +VS + ELFL+ L +++ E+ +E+  KTV   H++  V+R+ ++ DFL + +   P
Subjt:  QFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPP

AT5G19490.1 Histone superfamily protein2.4e-0833.33Show/hide
Query:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDEN--RP
        ++ +FP  R+KKIM+ D++VGK+      +VS A ELFL+ L   + +V + +  KTV   H++  V+   ++ DFL D++   P    + ++D++  + 
Subjt:  IRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDEN--RP

Query:  RTVVD
        R VVD
Subjt:  RTVVD

AT5G27910.1 nuclear factor Y, subunit C82.5e-0543.24Show/hide
Query:  PTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLD
        P  R+KKIMK D DV  + SEA  ++S A E+F+  L  +S   A E KR T++  ++  AV +   I DFLLD
Subjt:  PTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLD

AT5G43250.1 nuclear factor Y, subunit C133.9e-3562.77Show/hide
Query:  EEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSK
        EEE G  IRP+FP GRVKKIMK+DKD+ K+NSEAL +++ +TELFL  LAEKSA V  EKKRKTV L+H+R+AVKRH+  SDFLLDSLPLP Q    P K
Subjt:  EEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSK

Query:  DENRPRTVVDK---GPPEGTRRIDDFFRR-SAKTTSA
             ++V DK    PP GTRRIDDFF +  AKT SA
Subjt:  DENRPRTVVDK---GPPEGTRRIDDFFRR-SAKTTSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGGAATCCGGAGAGGTCATCCGGCCGCAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGATCGACAAGGACGTCGGCAAAGTGAACTCAGAAGCACT
GTTTATCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGTCGAGAAGAAACGGAAGACCGTGAAGCTCGAACACATCCGAG
TCGCCGTCAAAAGGCATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGACGTCGGATGCTCCGTCGAAGGACGAGAATCGCCCTCGCACTGTC
GTTGATAAAGGGCCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGTCAGCAAAGACAACGTCGGCGGAGACCAATGAGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGGAATCCGGAGAGGTCATCCGGCCGCAATTTCCGACGGGACGAGTGAAGAAGATAATGAAGATCGACAAGGACGTCGGCAAAGTGAACTCAGAAGCACT
GTTTATCGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGTCGAGAAGAAACGGAAGACCGTGAAGCTCGAACACATCCGAG
TCGCCGTCAAAAGGCATCGATCGATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCACCTCAGACGTCGGATGCTCCGTCGAAGGACGAGAATCGCCCTCGCACTGTC
GTTGATAAAGGGCCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGTCAGCAAAGACAACGTCGGCGGAGACCAATGAGTCATAG
Protein sequenceShow/hide protein sequence
MAEEESGEVIRPQFPTGRVKKIMKIDKDVGKVNSEALFIVSCATELFLKLLAEKSAEVAVEKKRKTVKLEHIRVAVKRHRSISDFLLDSLPLPPQTSDAPSKDENRPRTV
VDKGPPEGTRRIDDFFRRSAKTTSAETNES