; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004800 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004800
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:7161419..7163548
RNA-Seq ExpressionLag0004800
SyntenyLag0004800
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0755075.1 hypothetical protein [Gossypium gossypioides]1.4e-1835.62Show/hide
Query:  KWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFG
        KW+PP++   KVN DAAFC    ++ +G+V+R+ LG VM S  V +  V ++   E LA +  +    D G   V++E DS R  ++  +  + D S  G
Subjt:  KWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFG

Query:  VLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALREGGCEYWMESVPACAYLPVEED
        V V E R        + F  T RE N VAH +A +  + G  +YW+E VP  A    E+D
Subjt:  VLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALREGGCEYWMESVPACAYLPVEED

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]1.2e-1939.34Show/hide
Query:  LVGWAVNYLAVFR----GVSQTLCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMG
        +V W  +YL V++    G S  L    RGG  S   W PP   ++KVNVDAAF       G  I++RD    V+LS       V +  LAE LA  +G+ 
Subjt:  LVGWAVNYLAVFR----GVSQTLCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMG

Query:  LVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEV-PVHFQLGFSFTRREGNRVAHELARLALREGGCEYWME
        L ++ GL P  +ETDS +V++LL+ +   D SE GVL    R  V  +H   GFSF  REGN  AH LAR+ +       W+E
Subjt:  LVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEV-PVHFQLGFSFTRREGNRVAHELARLALREGGCEYWME

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]2.1e-1933.52Show/hide
Query:  LVGWAVNYLAVFRG-----------VSQTLCEGSR-GGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAG-IVVRDELGRVMLSVAVRHDQVGNSDLAE
        L GW   Y+A F+            VSQ+  + S+    ++   W P E+G +K+  DA+F       G G I++RD  G+V+ S     + V + D AE
Subjt:  LVGWAVNYLAVFRG-----------VSQTLCEGSR-GGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAG-IVVRDELGRVMLSVAVRHDQVGNSDLAE

Query:  GLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALR
         LA V+G+ + ++ G++P++LETDS+R+Y+L        LS+ G ++   +  +    Q+ +SFT+R GN +AH LAR AL+
Subjt:  GLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALR

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.3e-2438.12Show/hide
Query:  LVGWAVNYLAVFRGVSQTLCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVD
        LV WA  Y+  FR  +     G R    + V W+PP++  YK+N DA+F       G GI++R++ G+VM S     + + + D+AE +  V+G+ L   
Subjt:  LVGWAVNYLAVFRGVSQTLCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVD

Query:  MGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALREGGCEYWMESVP
        +G+ PVILETDS R+++L  + +  DLSE G +VL+A+          F+F +REGN+ AH LAR AL       WME  P
Subjt:  MGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALREGGCEYWMESVP

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.6e-1936.17Show/hide
Query:  LVGWAVNYLAVFRGVSQT------LCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDG
        LV W+ NYL V++   ++      +C      P     W PP     KVNVDAAF  E    G G+++RD  G V L+      +  + D  EG AV +G
Subjt:  LVGWAVNYLAVFRGVSQT------LCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDG

Query:  MGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQ-LGFSFTRREGNRVAHELARLALREGGCEYWMESVP
        + L V+ G     +ETDS+R+++LL    + D SE GVL    +  +  H + + FSFT R GN  AH LA+LAL     + W+E  P
Subjt:  MGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQ-LGFSFTRREGNRVAHELARLALREGGCEYWMESVP

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077756.0e-2039.34Show/hide
Query:  LVGWAVNYLAVFR----GVSQTLCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMG
        +V W  +YL V++    G S  L    RGG  S   W PP   ++KVNVDAAF       G  I++RD    V+LS       V +  LAE LA  +G+ 
Subjt:  LVGWAVNYLAVFR----GVSQTLCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMG

Query:  LVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEV-PVHFQLGFSFTRREGNRVAHELARLALREGGCEYWME
        L ++ GL P  +ETDS +V++LL+ +   D SE GVL    R  V  +H   GFSF  REGN  AH LAR+ +       W+E
Subjt:  LVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEV-PVHFQLGFSFTRREGNRVAHELARLALREGGCEYWME

A0A6J1CDQ4 uncharacterized protein LOC1110105331.0e-1933.52Show/hide
Query:  LVGWAVNYLAVFRG-----------VSQTLCEGSR-GGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAG-IVVRDELGRVMLSVAVRHDQVGNSDLAE
        L GW   Y+A F+            VSQ+  + S+    ++   W P E+G +K+  DA+F       G G I++RD  G+V+ S     + V + D AE
Subjt:  LVGWAVNYLAVFRG-----------VSQTLCEGSR-GGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAG-IVVRDELGRVMLSVAVRHDQVGNSDLAE

Query:  GLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALR
         LA V+G+ + ++ G++P++LETDS+R+Y+L        LS+ G ++   +  +    Q+ +SFT+R GN +AH LAR AL+
Subjt:  GLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALR

A0A6J1CIF1 uncharacterized protein LOC1110112376.2e-2538.12Show/hide
Query:  LVGWAVNYLAVFRGVSQTLCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVD
        LV WA  Y+  FR  +     G R    + V W+PP++  YK+N DA+F       G GI++R++ G+VM S     + + + D+AE +  V+G+ L   
Subjt:  LVGWAVNYLAVFRGVSQTLCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVD

Query:  MGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALREGGCEYWMESVP
        +G+ PVILETDS R+++L  + +  DLSE G +VL+A+          F+F +REGN+ AH LAR AL       WME  P
Subjt:  MGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALREGGCEYWMESVP

A0A6J1DBJ7 uncharacterized protein LOC1110189737.8e-2036.17Show/hide
Query:  LVGWAVNYLAVFRGVSQT------LCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDG
        LV W+ NYL V++   ++      +C      P     W PP     KVNVDAAF  E    G G+++RD  G V L+      +  + D  EG AV +G
Subjt:  LVGWAVNYLAVFRGVSQT------LCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDG

Query:  MGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQ-LGFSFTRREGNRVAHELARLALREGGCEYWMESVP
        + L V+ G     +ETDS+R+++LL    + D SE GVL    +  +  H + + FSFT R GN  AH LA+LAL     + W+E  P
Subjt:  MGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQ-LGFSFTRREGNRVAHELARLALREGGCEYWMESVP

A0A7J9D3I9 RNase H domain-containing protein6.6e-1935.62Show/hide
Query:  KWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFG
        KW+PP++   KVN DAAFC    ++ +G+V+R+ LG VM S  V +  V ++   E LA +  +    D G   V++E DS R  ++  +  + D S  G
Subjt:  KWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFG

Query:  VLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALREGGCEYWMESVPACAYLPVEED
        V V E R        + F  T RE N VAH +A +  + G  +YW+E VP  A    E+D
Subjt:  VLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALREGGCEYWMESVPACAYLPVEED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G13980.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.5e-0428.15Show/hide
Query:  KWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFG
        KW  P     K N DA F  +   + A  ++R+  G      +++ D       AE  A++  +      G   VI+E D   + +L+  S  +  +   
Subjt:  KWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFG

Query:  VLVLEARKEVPVHFQLGFSFTRREGNRVAHELARL
         L+ + R        + FSF RR GN+VAHELA+L
Subjt:  VLVLEARKEVPVHFQLGFSFTRREGNRVAHELARL

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.7e-0630Show/hide
Query:  EGSRGGPR----STVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVDMGLAPVILETDSMRVY
        EG   GP+     +V+W  P   W K N DA +  E  R G G ++R+E G V+   A    +  N   AE  A+   +  +       +I E+D+  + 
Subjt:  EGSRGGPR----STVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSVAVRHDQVGNSDLAEGLAVVDGMGLVVDMGLAPVILETDSMRVY

Query:  SLLQESTLADLSEFGVLVLEARKEVPVHF-QLGFSFTRREGNRVAHELAR
        +LL      D        LE  +++  HF ++ F FT R GN+VA  +AR
Subjt:  SLLQESTLADLSEFGVLVLEARKEVPVHF-QLGFSFTRREGNRVAHELAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGATCCAAGAGATCATCAACGTAGTAGGTCGATCATCCAAGAAGCTCAACAAATCGACCCAAGAAGATCAACTAGAGGCGCCAAAAGGGTGGGTTCCTTCAGCAGG
GCTTGTGGGTTGGGCGGTGAATTATCTGGCTGTTTTTCGAGGGGTCTCCCAGACCTTGTGCGAGGGGAGTAGAGGGGGGCCTCGGAGTACGGTAAAATGGGTCCCTCCGG
AGCAGGGTTGGTATAAAGTGAATGTGGATGCTGCCTTTTGTGATGAGTTTTCTCGGACGGGTGCTGGGATTGTTGTTCGGGATGAGTTAGGGCGAGTCATGCTGTCAGTT
GCTGTTCGACATGATCAGGTGGGGAATTCAGATTTGGCAGAAGGTCTGGCGGTGGTGGATGGGATGGGGCTTGTGGTGGATATGGGTTTAGCTCCGGTAATCCTTGAGAC
GGACTCTATGCGGGTTTACTCGCTGTTGCAAGAGTCTACGTTAGCAGATCTGTCTGAGTTCGGTGTGCTGGTTTTGGAGGCTCGTAAGGAGGTGCCTGTGCATTTTCAGC
TCGGTTTCAGTTTTACACGAAGGGAAGGAAATCGTGTCGCCCATGAGTTAGCCCGTTTGGCTTTGAGGGAGGGGGGTTGTGAGTATTGGATGGAATCAGTTCCTGCGTGT
GCCTATCTTCCAGTTGAGGAGGATAGTTTATCTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGATCCAAGAGATCATCAACGTAGTAGGTCGATCATCCAAGAAGCTCAACAAATCGACCCAAGAAGATCAACTAGAGGCGCCAAAAGGGTGGGTTCCTTCAGCAGG
GCTTGTGGGTTGGGCGGTGAATTATCTGGCTGTTTTTCGAGGGGTCTCCCAGACCTTGTGCGAGGGGAGTAGAGGGGGGCCTCGGAGTACGGTAAAATGGGTCCCTCCGG
AGCAGGGTTGGTATAAAGTGAATGTGGATGCTGCCTTTTGTGATGAGTTTTCTCGGACGGGTGCTGGGATTGTTGTTCGGGATGAGTTAGGGCGAGTCATGCTGTCAGTT
GCTGTTCGACATGATCAGGTGGGGAATTCAGATTTGGCAGAAGGTCTGGCGGTGGTGGATGGGATGGGGCTTGTGGTGGATATGGGTTTAGCTCCGGTAATCCTTGAGAC
GGACTCTATGCGGGTTTACTCGCTGTTGCAAGAGTCTACGTTAGCAGATCTGTCTGAGTTCGGTGTGCTGGTTTTGGAGGCTCGTAAGGAGGTGCCTGTGCATTTTCAGC
TCGGTTTCAGTTTTACACGAAGGGAAGGAAATCGTGTCGCCCATGAGTTAGCCCGTTTGGCTTTGAGGGAGGGGGGTTGTGAGTATTGGATGGAATCAGTTCCTGCGTGT
GCCTATCTTCCAGTTGAGGAGGATAGTTTATCTTTGTAA
Protein sequenceShow/hide protein sequence
MPIQEIINVVGRSSKKLNKSTQEDQLEAPKGWVPSAGLVGWAVNYLAVFRGVSQTLCEGSRGGPRSTVKWVPPEQGWYKVNVDAAFCDEFSRTGAGIVVRDELGRVMLSV
AVRHDQVGNSDLAEGLAVVDGMGLVVDMGLAPVILETDSMRVYSLLQESTLADLSEFGVLVLEARKEVPVHFQLGFSFTRREGNRVAHELARLALREGGCEYWMESVPAC
AYLPVEEDSLSL