; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004816 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004816
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationchr6:7377694..7378191
RNA-Seq ExpressionLag0004816
SyntenyLag0004816
Gene Ontology termsGO:0008152 - metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]4.4e-1142.72Show/hide
Query:  SECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRR--STILFLEGSKGKGWAIM
        SECG+KI +EERNG R RK+EL++GTS WVR CLV+ ++  +P+ FWRRR L+  V+         G+ G       SGRR  +    LEG  G   ++ 
Subjt:  SECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRR--STILFLEGSKGKGWAIM

Query:  AGE
        +G+
Subjt:  AGE

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]1.8e-2042.48Show/hide
Query:  MRRVVIERKTFTLCRSECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRRSTIL
        M ++ I+RK F +      +KI +EERNG    K+ELD GTS WVR CLV  + A + + FW +RRL+  ++FFQ L N +GR+ +LSLE    R++ I 
Subjt:  MRRVVIERKTFTLCRSECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRRSTIL

Query:  FLEGSKGKGWAIMAGEFFGFLDHLGESIVRKT----TPALQIEG----GKLVR
          EGS+G GW  +AGE    L   G +I +KT     PA   E     GK+VR
Subjt:  FLEGSKGKGWAIMAGEFFGFLDHLGESIVRKT----TPALQIEG----GKLVR

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein1.9e-1248.78Show/hide
Query:  VELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRRSTILFLEGSKGKGWAIMAGE
        +ELD GTS  VR CL + + A +P  FW RR L   ++FFQ L NARGR+ +LSLE   G+++ I   +GSKGKG    A E
Subjt:  VELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRRSTILFLEGSKGKGWAIMAGE

A0A0A0KGZ5 Uncharacterized protein2.0e-0945.71Show/hide
Query:  SECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYG
        ++CG+KI +EE NG R  K+EL++G S WV  CLV+ ++  +P+GFW RR L+   +FFQ  ++  GR G
Subjt:  SECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYG

A0A0A0LY03 Uncharacterized protein2.1e-1440.21Show/hide
Query:  KKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRRSTILFLEGSKGKGWAIMAGE
        +KI +EERNG +  K++LD+GT TWV   L + + A   +G W+R++LD  ++FFQ L N   R+ ++SL+   GR++ +   EGS+  GW  +A E
Subjt:  KKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRRSTILFLEGSKGKGWAIMAGE

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X22.1e-1142.72Show/hide
Query:  SECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRR--STILFLEGSKGKGWAIM
        SECG+KI +EERNG R RK+EL++GTS WVR CLV+ ++  +P+ FWRRR L+  V+         G+ G       SGRR  +    LEG  G   ++ 
Subjt:  SECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRR--STILFLEGSKGKGWAIM

Query:  AGE
        +G+
Subjt:  AGE

A0A5D3CQQ0 Uncharacterized protein8.6e-2142.48Show/hide
Query:  MRRVVIERKTFTLCRSECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRRSTIL
        M ++ I+RK F +      +KI +EERNG    K+ELD GTS WVR CLV  + A + + FW +RRL+  ++FFQ L N +GR+ +LSLE    R++ I 
Subjt:  MRRVVIERKTFTLCRSECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRRSTIL

Query:  FLEGSKGKGWAIMAGEFFGFLDHLGESIVRKT----TPALQIEG----GKLVR
          EGS+G GW  +AGE    L   G +I +KT     PA   E     GK+VR
Subjt:  FLEGSKGKGWAIMAGEFFGFLDHLGESIVRKT----TPALQIEG----GKLVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGGGTGGTTATTGAAAGGAAGACGTTTACTCTTTGTAGAAGTGAGTGTGGGAAGAAAATTACGGTAGAAGAACGTAATGGTTCTAGGGTGAGGAAGGTGGAGTT
GGATATGGGTACCTCAACGTGGGTGAGACATTGTTTAGTTTCAGGGTCAAAAGCTGGACATCCGGTGGGTTTTTGGAGAAGAAGGAGGTTAGATGCAATTGTAGTTTTCT
TCCAGTTTTTATCAAATGCGAGAGGTCGGTATGGCGTTCTCTCATTGGAACCTTCTAGTGGTAGGAGATCCACGATACTTTTCCTGGAAGGATCGAAAGGTAAGGGGTGG
GCGATCATGGCTGGAGAATTTTTTGGGTTCCTCGACCATCTAGGGGAATCCATAGTAAGGAAGACAACACCCGCTCTTCAAATTGAAGGGGGGAAGTTAGTGAGAATAGA
GAAAAGAAATCCTTTGCGCATGTGGTGGGTGGAGGAGCAAGAATTGCAGAAGTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGGGTGGTTATTGAAAGGAAGACGTTTACTCTTTGTAGAAGTGAGTGTGGGAAGAAAATTACGGTAGAAGAACGTAATGGTTCTAGGGTGAGGAAGGTGGAGTT
GGATATGGGTACCTCAACGTGGGTGAGACATTGTTTAGTTTCAGGGTCAAAAGCTGGACATCCGGTGGGTTTTTGGAGAAGAAGGAGGTTAGATGCAATTGTAGTTTTCT
TCCAGTTTTTATCAAATGCGAGAGGTCGGTATGGCGTTCTCTCATTGGAACCTTCTAGTGGTAGGAGATCCACGATACTTTTCCTGGAAGGATCGAAAGGTAAGGGGTGG
GCGATCATGGCTGGAGAATTTTTTGGGTTCCTCGACCATCTAGGGGAATCCATAGTAAGGAAGACAACACCCGCTCTTCAAATTGAAGGGGGGAAGTTAGTGAGAATAGA
GAAAAGAAATCCTTTGCGCATGTGGTGGGTGGAGGAGCAAGAATTGCAGAAGTCGTGA
Protein sequenceShow/hide protein sequence
MRRVVIERKTFTLCRSECGKKITVEERNGSRVRKVELDMGTSTWVRHCLVSGSKAGHPVGFWRRRRLDAIVVFFQFLSNARGRYGVLSLEPSSGRRSTILFLEGSKGKGW
AIMAGEFFGFLDHLGESIVRKTTPALQIEGGKLVRIEKRNPLRMWWVEEQELQKS