CuGenDBv2

Gene ID	Lag0004823
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	chr6:7483909..7486607
RNA-Seq Expression	Lag0004823
Synteny	Lag0004823
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009561 - megagametogenesis (biological process) GO:0050794 - regulation of cellular process (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8647278.1 hypothetical protein Csa_003919, partial [Cucumis sativus]

1.3e-21

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLI
        MVVK  EN+DYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTNKKLRNIL++
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLI

KAG6585275.1 DNA-directed RNA polymerase I subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-19

92.73

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVK  ENQDYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTN+KLR
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

KAG7020194.1 DNA-directed RNA polymerase I subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-19

92.73

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVK  ENQDYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTN+KLR
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

XP_004146776.1 DNA-directed RNA polymerase I subunit 2 [Cucumis sativus]

1.2e-19

92.73

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVK  EN+DYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTNKKLR
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

XP_022131547.1 DNA-directed RNA polymerase I subunit 2 [Momordica charantia]

1.2e-19

90.91

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVK GEN DYEALRELFRHHIESFDHLVDAGLET+LNS+KPVE+YDSFTNKKLR
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KFX3 Uncharacterized protein

6.1e-22

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLI
        MVVK  EN+DYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTNKKLRNIL++
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLI

A0A1S3BCJ8 DNA-directed RNA polymerase subunit beta

9.7e-20

92.73

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVK  EN+DYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTNKKLR
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

A0A6J1BRB2 DNA-directed RNA polymerase subunit beta

5.7e-20

90.91

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVK GEN DYEALRELFRHHIESFDHLVDAGLET+LNS+KPVE+YDSFTNKKLR
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

A0A6J1GI72 DNA-directed RNA polymerase subunit beta

1.3e-19

92.73

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVK  ENQDYEALRELFRHHIESFDHLVDAGLETL+NSIKPVEIYDSFTN+KLR
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

A0A6J1KKK5 DNA-directed RNA polymerase subunit beta

4.8e-19

89.09

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Query:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR
        MVVK  ENQDYEALRELFRHHIES+DHLVDAGLETL+NSIKPVEIYDSFT++KLR
Subjt:  MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLR

SwissProt top hits

e value

%identity

Alignment

F4I366 DNA-directed RNA polymerase I subunit 2

3.8e-05

45.65

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Query:  QDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKL
        +D++ L  L  HHIESFD++   GL+ + N IKPV +YD  T  +L
Subjt:  QDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKL

Arabidopsis top hits

e value

%identity

Alignment

AT1G29940.1 nuclear RNA polymerase A2

2.7e-06

45.65

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Query:  QDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKL
        +D++ L  L  HHIESFD++   GL+ + N IKPV +YD  T  +L
Subjt:  QDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKL

Sequences

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CDS sequence

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ATGGTGGTGAAATTGGGCGAGAACCAAGACTATGAAGCGTTGCGTGAGCTGTTCAGACACCATATAGAATCGTTCGATCATCTCGTCGATGCGGGATTGGAGACACTCTT
GAACAGCATCAAACCCGTCGAAATTTACGACTCCTTCACCAACAAAAAGCTTAGAAATATCCTACTCATTGGACAGAGGAAGACGGCGGAGAAGATGGTGGTGAAATTGG
GCGAGAACCAAGACTATGAAGCGTTGCGTGAGCTGTTCAGACACCATATAGAATCGTTCGATCATCTCGTCGATGCGGGATTGGAGACACTCTTGAACAGAGCATCAAAC
CCGTCGAAATTTACGACTCCTTCACCAACAAAAAGCTTAGAAATATCTACTCATGTATTCAAGGCTTTTAGTTTAGCGGAGGAAATAGTGGTTTTTGGCGGTCGGGGTGG
GCAGCCCTGGCTTCCGATGGTGAAGGAGACCCTCGATCATATTTTGTGGATTGTGATTTTGCGTGTTGGTTGGAACACTTCTTTGAGATATTTGGGCTTCAATTCGTTAG
ACACAGGACTTTGGGAGATGATCGATGAGTTCCTTCCCATCCTCCTTTTCGGACCAAGGGAACTCTTATGCAAGCTGGGATTTGTGCTATTATTTGGGGCTGTGGGGTGA

mRNA sequence

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Protein sequence

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MVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNSIKPVEIYDSFTNKKLRNILLIGQRKTAEKMVVKLGENQDYEALRELFRHHIESFDHLVDAGLETLLNRASN
PSKFTTPSPTKSLEISTHVFKAFSLAEEIVVFGGRGGQPWLPMVKETLDHILWIVILRVGWNTSLRYLGFNSLDTGLWEMIDEFLPILLFGPRELLCKLGFVLLFGAVG

Lag0004823 (gene) of Sponge gourd (AG-4) v1 genome