; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004846 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004846
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:7696081..7696644
RNA-Seq ExpressionLag0004846
SyntenyLag0004846
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7055611.1 unnamed protein product [Microthlaspi erraticum]4.0e-0647.06Show/hide
Query:  SHPSWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFR
        S   WRPP HG WK N+D SW  +  K G+GW++RD +G++I  G K   R
Subjt:  SHPSWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFR
CAB4279811.1 unnamed protein product [Prunus armeniaca]3.4e-0540.54Show/hide
Query:  SWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITILLAHQVALAAAKHG
        SWR   +G  K+N DA+W+   + GG+GWV+RDS G ++ AGCK   R  S  A+E   I    +  LA  + G
Subjt:  SWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITILLAHQVALAAAKHG
XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]2.3e-0651.85Show/hide
Query:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGC-KQVFRSLSVKA
        W PP    WKLN DA+W+DS+  GGLGW++RDS G  I A C K + +SL+++A
Subjt:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGC-KQVFRSLSVKA
XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.6e-0546.67Show/hide
Query:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITIL
        W PP    W LN+DASW DS  +GG+GW+IR   G ++ AG + V    +VK LE   IL
Subjt:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITIL
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.5e-0540.68Show/hide
Query:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITI
        W+PP   SWKLN+DA+W      GG+GW++RD  G +I A C+ +    ++  LE + I
Subjt:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITI
TrEMBL top hitse value%identityAlignment
A0A6D2KM87 RNase H domain-containing protein1.9e-0647.06Show/hide
Query:  SHPSWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFR
        S   WRPP HG WK N+D SW  +  K G+GW++RD +G++I  G K   R
Subjt:  SHPSWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFR
A0A6J1D4B6 uncharacterized protein LOC1110171811.1e-0651.85Show/hide
Query:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGC-KQVFRSLSVKA
        W PP    WKLN DA+W+DS+  GGLGW++RDS G  I A C K + +SL+++A
Subjt:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGC-KQVFRSLSVKA
A0A6J1DNV9 uncharacterized protein LOC1110224031.2e-0546.67Show/hide
Query:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITIL
        W PP    W LN+DASW DS  +GG+GW+IR   G ++ AG + V    +VK LE   IL
Subjt:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITIL
A0A6J1DSV1 uncharacterized protein LOC1110236087.3e-0640.68Show/hide
Query:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITI
        W+PP   SWKLN+DA+W      GG+GW++RD  G +I A C+ +    ++  LE + I
Subjt:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITI
A0A6J5UAY2 Reverse transcriptase domain-containing protein1.6e-0545Show/hide
Query:  SWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITI
        SWR P +G  K+N DA+W+   + GG+GWV+RDS G ++ AG K   R  S  A+E   I
Subjt:  SWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.0e-0544.44Show/hide
Query:  SHPSWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAG
        +H  WR P+ G  K N D S+++   K   GWV+RDS+GS + AG
Subjt:  SHPSWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAG
AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)8.0e-0533.85Show/hide
Query:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITILLAHQV
        W PP  G  K N D+ ++         W+IRDS+G +I +GC ++ +S S    E +  L A Q+
Subjt:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITILLAHQV
AT4G29090.1 Ribonuclease H-like superfamily protein1.4e-0436.36Show/hide
Query:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALE
        WRPP H   K N+DA+W    ++ G+GWV+R+  G +   G + + +  SV   E
Subjt:  WRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCACCCTTCTTGGAGGCCACCGGATCATGGTTCGTGGAAGCTCAACTCAGATGCGTCTTGGATTGATTCCATCAAAAAAGGCGGTTTGGGATGGGTGATTCGTGA
CTCATCTGGATCTTTAATTGGAGCGGGCTGCAAGCAAGTATTTCGATCGTTGTCAGTAAAAGCCCTTGAAGGAATTACAATACTTTTGGCTCATCAAGTTGCTCTTGCAG
CAGCAAAGCATGGGAGTTGCTCTGTTTTTTTTTTTGGTCATGCATCTTCTGGTAGGTTGGAAGATGTGGTGCGGATGAGGGATGAGAGTATCCCTCAATGGTTCATTGAT
TCTTTTGCTGGTGTAGTTGGTGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCACCCTTCTTGGAGGCCACCGGATCATGGTTCGTGGAAGCTCAACTCAGATGCGTCTTGGATTGATTCCATCAAAAAAGGCGGTTTGGGATGGGTGATTCGTGA
CTCATCTGGATCTTTAATTGGAGCGGGCTGCAAGCAAGTATTTCGATCGTTGTCAGTAAAAGCCCTTGAAGGAATTACAATACTTTTGGCTCATCAAGTTGCTCTTGCAG
CAGCAAAGCATGGGAGTTGCTCTGTTTTTTTTTTTGGTCATGCATCTTCTGGTAGGTTGGAAGATGTGGTGCGGATGAGGGATGAGAGTATCCCTCAATGGTTCATTGAT
TCTTTTGCTGGTGTAGTTGGTGGTTGA
Protein sequenceShow/hide protein sequence
MSHPSWRPPDHGSWKLNSDASWIDSIKKGGLGWVIRDSSGSLIGAGCKQVFRSLSVKALEGITILLAHQVALAAAKHGSCSVFFFGHASSGRLEDVVRMRDESIPQWFID
SFAGVVGG