; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004901 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004901
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:8276981..8277499
RNA-Seq ExpressionLag0004901
SyntenyLag0004901
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH00303.1 Ribonuclease H-like superfamily protein [Prunus dulcis]1.8e-0732.82Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE
        +N + +W     RGGVGW+L D  G  I  G     R  S    E +A+ E L           +L F  + VES + S++K+LNKE+   ++I  +  +
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE

Query:  VLQLKDSFGKLSFVFCPRSCNVTAHNLACIA
        V  L      + F++ PR CN  AHN+A  A
Subjt:  VLQLKDSFGKLSFVFCPRSCNVTAHNLACIA

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]4.6e-1135.9Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE
        +N  ASWS+   +GGV W++HD  GSSIC+  K + R W VK LE KA++EGL++   ++ +      P+I +E     + +ILN    D +++S + +E
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE

Query:  VLQLKDSFGKLSFVFCP
        +  L+   G +SF   P
Subjt:  VLQLKDSFGKLSFVFCP

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.3e-0732.81Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE
        +N NA+W    N GG+GWIL D  G  I    + I    ++ +LE+ AI EGLR++        +   P I +ES +   + +L+++ +DQ +I +L EE
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE

Query:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA
        + Q+      +S     R  N  AH LA
Subjt:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]6.4e-1336.72Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE
        +N +ASWSD+ +RGG+GWI+  + G  +  G + +    +VK LE  AILEGLR+L +L           + +E+ +  V  +LN++ +D  K  ++ EE
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE

Query:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA
        +L L+DS   L+F    R  N  AH+LA
Subjt:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA

XP_028959358.1 uncharacterized protein LOC114825151 [Malus domestica]1.8e-0730.3Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE
        +N +A+W  A   GGVGW+L DF+G  +        R       E +AI  GL    S+  S        +VVES +  ++ +LNKE    +K+    ++
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE

Query:  VLQLKDSFGKLSFVFCPRSCNVTAHNLACIAI
        + ++   F  + F F PR CN  AH++A   +
Subjt:  VLQLKDSFGKLSFVFCPRSCNVTAHNLACIAI

TrEMBL top hitse value%identityAlignment
A0A4Y1R838 Ribonuclease H-like superfamily protein8.7e-0832.82Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE
        +N + +W     RGGVGW+L D  G  I  G     R  S    E +A+ E L           +L F  + VES + S++K+LNKE+   ++I  +  +
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE

Query:  VLQLKDSFGKLSFVFCPRSCNVTAHNLACIA
        V  L      + F++ PR CN  AHN+A  A
Subjt:  VLQLKDSFGKLSFVFCPRSCNVTAHNLACIA

A0A6J1CP26 uncharacterized protein LOC1110134121.1e-0732.81Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE
        +N NA+W    N GG+GWIL D  G  I    + I    ++ +LE+ AI EGLR++        +   P I +ES +   + +L+++ +DQ +I +L EE
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE

Query:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA
        + Q+      +S     R  N  AH LA
Subjt:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA

A0A6J1DNV9 uncharacterized protein LOC1110224033.1e-1336.72Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE
        +N +ASWSD+ +RGG+GWI+  + G  +  G + +    +VK LE  AILEGLR+L +L           + +E+ +  V  +LN++ +D  K  ++ EE
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE

Query:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA
        +L L+DS   L+F    R  N  AH+LA
Subjt:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA

A0A6J1DSV1 uncharacterized protein LOC1110236081.9e-0731.54Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSL--PSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLT
        +N +A+W    N GG+GWIL D  G  I    + I    ++ +LE+ AI EGLR++     +    +   P I +ES +   + +L+++ +DQ +I +L 
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSL--PSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLT

Query:  EEVLQLKDSFGKLSFVFCPRSCNVTAHNLA
        EE+ Q+ +    +S     R  N  AH+LA
Subjt:  EEVLQLKDSFGKLSFVFCPRSCNVTAHNLA

A0A6P5S2T0 uncharacterized protein LOC1107519131.5e-0729.69Show/hide
Query:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE
        +N + +W     RGGVGW++ D  G  +C G +   R  S   +E+ AI   L +    + +H       ++VES     + +LN +      +  +  +
Subjt:  MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEE

Query:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA
        + QL  +F ++SFVF P+SCN  AH +A
Subjt:  VLQLKDSFGKLSFVFCPRSCNVTAHNLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0628.03Show/hide
Query:  NFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEEV
        N +A+W     R G+GWIL + SG  + MG + + R+ +V   E++A+   + ++           +  I+ ES A ++V +LN ++     +    E++
Subjt:  NFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEEV

Query:  LQLKDSFGKLSFVFCPRSCNVTAHNLACIAIS
         QL   F ++ F F PR  N  A  +A  +IS
Subjt:  LQLKDSFGKLSFVFCPRSCNVTAHNLACIAIS

AT4G29090.1 Ribonuclease H-like superfamily protein4.7e-0625.76Show/hide
Query:  NFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEEV
        N +A+W+    R G+GW+L +  G    MG + + +  SV   E++A+   + SL   + ++       ++ ES +  +++ILN +E     +    +++
Subjt:  NFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEEV

Query:  LQLKDSFGKLSFVFCPRSCNVTAHNLACIAIS
         +L   F ++ FVF PR  N  A  +A  ++S
Subjt:  LQLKDSFGKLSFVFCPRSCNVTAHNLACIAIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTCAATGCTTCTTGGAGCGATGCTCAAAACAGAGGAGGGGTTGGATGGATTCTTCATGACTTTTCAGGTTCTTCGATATGCATGGGATACAAGAGGATCAATAG
AAGCTGGTCTGTGAAATGGTTAGAAATGAAAGCAATCCTGGAGGGGCTCCGAAGCTTACCTTCCCTGAAAGCGTCCCATCACGACTTAGCCTTTCCCTTGATTGTGGTTG
AGTCTGTCGCAACTAGCGTGGTGAAAATTCTCAACAAGGAAGAAAAAGACCAAATGAAAATCTCCTTCCTGACCGAGGAGGTTCTGCAGCTGAAAGATTCTTTTGGCAAA
TTATCTTTCGTTTTTTGTCCGAGATCTTGCAATGTGACGGCTCACAATTTGGCGTGCATTGCTATTTCGTCTCCTTCGCTCTCTGTTTTGTTTGTTCTTCCACTTCAGAA
GATGAGGGAGGATTATGGATTGGGTCAGAGCCCGCTTAGACGATTCCTTTGTATTTGGTTTTGTATATCTTTACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTCAATGCTTCTTGGAGCGATGCTCAAAACAGAGGAGGGGTTGGATGGATTCTTCATGACTTTTCAGGTTCTTCGATATGCATGGGATACAAGAGGATCAATAG
AAGCTGGTCTGTGAAATGGTTAGAAATGAAAGCAATCCTGGAGGGGCTCCGAAGCTTACCTTCCCTGAAAGCGTCCCATCACGACTTAGCCTTTCCCTTGATTGTGGTTG
AGTCTGTCGCAACTAGCGTGGTGAAAATTCTCAACAAGGAAGAAAAAGACCAAATGAAAATCTCCTTCCTGACCGAGGAGGTTCTGCAGCTGAAAGATTCTTTTGGCAAA
TTATCTTTCGTTTTTTGTCCGAGATCTTGCAATGTGACGGCTCACAATTTGGCGTGCATTGCTATTTCGTCTCCTTCGCTCTCTGTTTTGTTTGTTCTTCCACTTCAGAA
GATGAGGGAGGATTATGGATTGGGTCAGAGCCCGCTTAGACGATTCCTTTGTATTTGGTTTTGTATATCTTTACTGTAA
Protein sequenceShow/hide protein sequence
MNFNASWSDAQNRGGVGWILHDFSGSSICMGYKRINRSWSVKWLEMKAILEGLRSLPSLKASHHDLAFPLIVVESVATSVVKILNKEEKDQMKISFLTEEVLQLKDSFGK
LSFVFCPRSCNVTAHNLACIAISSPSLSVLFVLPLQKMREDYGLGQSPLRRFLCIWFCISLL