CuGenDBv2

Gene ID	Lag0004917
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	CCHC-type domain-containing protein
Genome location	chr6:8458732..8459826
RNA-Seq Expression	Lag0004917
Synteny	Lag0004917
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR025558 - Domain of unknown function DUF4283 IPR025836 - Zinc knuckle CX2CX4HX4C IPR040256 - Uncharacterized protein At4g02000-like

Homology

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GenBank top hits

e value

%identity

Alignment

TXG51202.1 hypothetical protein EZV62_023726 [Acer yangbiense]

6.9e-35

37.86

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Query:  DIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFDNS
        +IA+ + +LSL D++     IP      +   V LCL GK+LSSKKVN DAF  +++ LW       IE V  N+F+F+F +  E+NR+    PW FD S
Subjt:  DIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFDNS

Query:  LLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLD----------SALRRGVTIQIGAGNERW-------------CPITYER
        L+VLV PE    +S+L FN    WV I +VP  C+   +AK +  +IG+ +D            L+  V I I    +RW               + YER
Subjt:  LLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLD----------SALRRGVTIQIGAGNERW-------------CPITYER

Query:  LPEFCFGCGRIGHHRRECL-TPPVADAGDRVD-QYGSWLRATG
        LPEFC+ CGRIGH  ++C       +A +RV  ++GSW+RA G
Subjt:  LPEFCFGCGRIGHHRRECL-TPPVADAGDRVD-QYGSWLRATG

TXG57139.1 hypothetical protein EZV62_018452 [Acer yangbiense]

5.3e-35

37.16

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Query:  DIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFDNS
        +IA+ ++ LS+ D++S    + ++      A V +CL GK++S KK N +AF+++++ LW       IESVG N+FVF F +  E+NR+ +  PW FDNS
Subjt:  DIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFDNS

Query:  LLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLDSALRRGVTIQIGAGNERWCPITYERLPEFCFGCGRIGHHRRECLTPPV
        L+ L  PE    +S L FN+   W+ I +VP  C+    AK + ++IG  L   L +       + N     + YERLPEFC+ CGRIGH  ++C     
Subjt:  LLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLDSALRRGVTIQIGAGNERWCPITYERLPEFCFGCGRIGHHRRECLTPPV

Query:  ADAGDRVD--QYGSWLRA
         +     D  +YGSW+RA
Subjt:  ADAGDRVD--QYGSWLRA

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]

4.4e-50

40.5

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Query:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD
        MD+I + W+    T+DE+  V I +  P L    V LC+  K+ +SK+++ +A RSVMKS+W+VH STR E +G N++V  F+S+ EK+RVLSS PW F+
Subjt:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD

Query:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY
         SLLVL  P    Q  +++FN  +FW+ I N+PF C++  MA +LG+++G                        D+   LRRG+ ++   G + WCP+ Y
Subjt:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY

Query:  ERLPEFCFGCGRIGHHRRECLTPPVADAGDRVDQYGSWLRAT
        E+LP+FC+ CG+IGH  REC         +  +QYG WLRAT
Subjt:  ERLPEFCFGCGRIGHHRRECLTPPVADAGDRVDQYGSWLRAT

XP_022155933.1 uncharacterized protein LOC111022932 [Momordica charantia]

1.6e-36

39.8

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Query:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD
        MD+I E W++ +LT ++   +II  + P + P  V     GK+ +SK+++ +AFRSVMKSLWKVH ST IE+ G N++V  F+S+ EKNRVL+S PW F+
Subjt:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD

Query:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY
         SLLVL  P    Q  +++FN  + W+ I  +PF C+   MAK LG+RIG+                       D+    +RG+ ++ G   E WCP+ Y
Subjt:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY

Query:  E
        E
Subjt:  E

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]

4.2e-40

38.36

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Query:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD
        MDDI + W++ +L  +E   ++I    P L    + LC  GK+  SK++  +AF SVMK +WK+H STRIE+ G N++V  F+++ EK RV S  PW FD
Subjt:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD

Query:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY
         SLL+LV      +  ++  +  +FWV I  + F C+T  MAK LG+R+G+                       ++   LRRG+ ++   G + WCP+ Y
Subjt:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY

Query:  ERLPEFCFGCGRIGHHRRE
        ERLP+FC+GCG +GH  RE
Subjt:  ERLPEFCFGCGRIGHHRRE

TrEMBL top hits

e value

%identity

Alignment

A0A5C7H466 CCHC-type domain-containing protein

3.3e-35

37.86

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Query:  DIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFDNS
        +IA+ + +LSL D++     IP      +   V LCL GK+LSSKKVN DAF  +++ LW       IE V  N+F+F+F +  E+NR+    PW FD S
Subjt:  DIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFDNS

Query:  LLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLD----------SALRRGVTIQIGAGNERW-------------CPITYER
        L+VLV PE    +S+L FN    WV I +VP  C+   +AK +  +IG+ +D            L+  V I I    +RW               + YER
Subjt:  LLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLD----------SALRRGVTIQIGAGNERW-------------CPITYER

Query:  LPEFCFGCGRIGHHRRECL-TPPVADAGDRVD-QYGSWLRATG
        LPEFC+ CGRIGH  ++C       +A +RV  ++GSW+RA G
Subjt:  LPEFCFGCGRIGHHRRECL-TPPVADAGDRVD-QYGSWLRATG

A0A5C7HK10 CCHC-type domain-containing protein

2.6e-35

37.16

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Query:  DIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFDNS
        +IA+ ++ LS+ D++S    + ++      A V +CL GK++S KK N +AF+++++ LW       IESVG N+FVF F +  E+NR+ +  PW FDNS
Subjt:  DIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFDNS

Query:  LLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLDSALRRGVTIQIGAGNERWCPITYERLPEFCFGCGRIGHHRRECLTPPV
        L+ L  PE    +S L FN+   W+ I +VP  C+    AK + ++IG  L   L +       + N     + YERLPEFC+ CGRIGH  ++C     
Subjt:  LLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLDSALRRGVTIQIGAGNERWCPITYERLPEFCFGCGRIGHHRRECLTPPV

Query:  ADAGDRVD--QYGSWLRA
         +     D  +YGSW+RA
Subjt:  ADAGDRVD--QYGSWLRA

A0A6J1D765 uncharacterized protein LOC111017902

2.2e-50

40.5

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Query:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD
        MD+I + W+    T+DE+  V I +  P L    V LC+  K+ +SK+++ +A RSVMKS+W+VH STR E +G N++V  F+S+ EK+RVLSS PW F+
Subjt:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD

Query:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY
         SLLVL  P    Q  +++FN  +FW+ I N+PF C++  MA +LG+++G                        D+   LRRG+ ++   G + WCP+ Y
Subjt:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY

Query:  ERLPEFCFGCGRIGHHRRECLTPPVADAGDRVDQYGSWLRAT
        E+LP+FC+ CG+IGH  REC         +  +QYG WLRAT
Subjt:  ERLPEFCFGCGRIGHHRRECLTPPVADAGDRVDQYGSWLRAT

A0A6J1DP89 uncharacterized protein LOC111022932

7.9e-37

39.8

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Query:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD
        MD+I E W++ +LT ++   +II  + P + P  V     GK+ +SK+++ +AFRSVMKSLWKVH ST IE+ G N++V  F+S+ EKNRVL+S PW F+
Subjt:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD

Query:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY
         SLLVL  P    Q  +++FN  + W+ I  +PF C+   MAK LG+RIG+                       D+    +RG+ ++ G   E WCP+ Y
Subjt:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY

Query:  E
        E
Subjt:  E

A0A6J1DVS4 uncharacterized protein LOC111023555

2.0e-40

38.36

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Query:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD
        MDDI + W++ +L  +E   ++I    P L    + LC  GK+  SK++  +AF SVMK +WK+H STRIE+ G N++V  F+++ EK RV S  PW FD
Subjt:  MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFD

Query:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY
         SLL+LV      +  ++  +  +FWV I  + F C+T  MAK LG+R+G+                       ++   LRRG+ ++   G + WCP+ Y
Subjt:  NSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQ-----------------------DLDSALRRGVTIQIGAGNERWCPITY

Query:  ERLPEFCFGCGRIGHHRRE
        ERLP+FC+GCG +GH  RE
Subjt:  ERLPEFCFGCGRIGHHRRE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G42140.1 zinc ion binding;nucleic acid binding

2.2e-10

29.63

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Query:  FQFRSVLEKNRVLSSSPWLFDNSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLDSALRRGVTIQIGAGNERWCPITYER
        F F+S      +L   PW F++   + V+       S+  F R  FW+ I+ +P   LT  +   +G R+G  L++ L R V++             YE+
Subjt:  FQFRSVLEKNRVLSSSPWLFDNSLLVLVVPEENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLDSALRRGVTIQIGAGNERWCPITYER

Query:  LPEFCFGCGRIGHHRRECLTP----PVADAGDRVD
        L  FC  CG + H   EC T     P AD  D  D
Subjt:  LPEFCFGCGRIGHHRRECLTP----PVADAGDRVD

Sequences

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CDS sequence

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ATGGATGACATCGCTGAGCGTTGGAAAAGTCTCTCCCTCACGGACGACGAATCGACGGCTGTGATCATTCCTCAAGACGGTCCGTTCTTGGATCCTGCAATTGTTCCATT
ATGCCTGGCCGGGAAGGTTTTATCTAGCAAGAAAGTTAATCCTGATGCGTTCCGGTCGGTCATGAAATCTTTGTGGAAGGTTCACGTTTCGACTCGCATTGAATCAGTTG
GTGATAATATGTTTGTGTTTCAGTTTAGGTCGGTGTTGGAAAAGAATCGGGTCCTTTCGTCCAGTCCTTGGTTATTTGATAATTCTCTCCTTGTGCTGGTCGTGCCGGAG
GAAAACGTCCAGTTATCGGAGTTGTCCTTTAATCGAGCGTCATTCTGGGTGGTTATCCAAAATGTTCCTTTTAATTGTTTAACTATTGCTATGGCCAAGATGCTGGGCTC
CAGGATTGGTCAGGATTTAGATTCTGCACTCCGTCGAGGGGTTACGATTCAAATCGGAGCTGGCAATGAGCGGTGGTGTCCGATTACCTATGAACGATTGCCTGAATTTT
GTTTTGGATGTGGTCGTATTGGCCATCACCGTCGTGAGTGTTTGACCCCTCCGGTCGCTGATGCTGGGGATCGTGTTGATCAGTACGGTTCATGGCTTCGTGCGACCGGT
TTTCGTATGTTTCAGCGTTCTGCTCGTCTTGGTCCCATGGGATCGACTGGTCCTAATGTGGTGGTGGCAGTCGATACTCCCCCACCGACGACAGTTACAGTGGTTCCGCC
GGACGAGGATTCACCGGCGGAGGTCGTGGAGGCTCGACCGATGGATCTGGCGTCTAGTGCTGCACTTCCGAAAATTGTGGATAGTGGGACTGTGGTTGCGACTTCTGCGG
AGGCCATTACGGTGCAATCCCAGGGTCCTTCCTCGCCTGATGTGGGGGATCATGGGACCCACAATCCCAAATCTGTTGAGGTGCCATCTGTTGGGCCTAGTGGGCTGCCC
CCTTCTATTCAATCCGGATCCTCAAGGAAAAGTTAG

mRNA sequence

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Protein sequence

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MDDIAERWKSLSLTDDESTAVIIPQDGPFLDPAIVPLCLAGKVLSSKKVNPDAFRSVMKSLWKVHVSTRIESVGDNMFVFQFRSVLEKNRVLSSSPWLFDNSLLVLVVPE
ENVQLSELSFNRASFWVVIQNVPFNCLTIAMAKMLGSRIGQDLDSALRRGVTIQIGAGNERWCPITYERLPEFCFGCGRIGHHRRECLTPPVADAGDRVDQYGSWLRATG
FRMFQRSARLGPMGSTGPNVVVAVDTPPPTTVTVVPPDEDSPAEVVEARPMDLASSAALPKIVDSGTVVATSAEAITVQSQGPSSPDVGDHGTHNPKSVEVPSVGPSGLP
PSIQSGSSRKS

Lag0004917 (gene) of Sponge gourd (AG-4) v1 genome