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Lag0004939 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004939
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:8747591..8749957
RNA-Seq ExpressionLag0004939
SyntenyLag0004939
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5446505.1 hypothetical protein F2P56_032128 [Juglans regia]3.8e-2136.3Show/hide
Query:  KIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDE
        K+W+   +   K  GDN++   F+N  +K  IMEG PW+ D  L + ++       S+++FK   FW+   +LP VC+N+   E +G  +G  K+VD  E
Subjt:  KIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDE

Query:  LERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLP
           G G  LR+ I+V++ +PL RG  I +  +G+  W   KYEKLP
Subjt:  LERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLP

RLN12566.1 hypothetical protein C2845_PM09G10010 [Panicum miliaceum]3.3e-2032.19Show/hide
Query:  WKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDELE
        W N   ++++  GDN+F  +F +K++K+ I++G PW      +L +E     R + + F + S WV   +LP   +N  W   +   IG+ +KVD D   
Subjt:  WKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDELE

Query:  RGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY
        R  G  LR ++K+++ +PL+RG  +    +   EW  I+YEK+P+Y
Subjt:  RGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY

XP_018824501.1 uncharacterized protein LOC108993901 [Juglans regia]2.5e-2034.93Show/hide
Query:  KIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDE
        K+WK   +   K  GDN++   F N+ +K  I+EG PW+ D  L +  +       S+++FK   FW+   +LP +C+N+   E +G  +G  K+VD  E
Subjt:  KIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDE

Query:  LERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLP
           G G  LR+ I+V++ +PL RG  I +  +G+  W   K+EKLP
Subjt:  LERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLP

XP_021749920.1 uncharacterized protein LOC110715641 [Chenopodium quinoa]8.6e-2137.33Show/hide
Query:  IPKIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDW
        +  +W     V+IK    N+F  QF+N+ +K+ I+ G PW  DG LLL +EI   E+ S + F  A  WV  +D+P    N +    +G+++G F K+D 
Subjt:  IPKIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDW

Query:  DELERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY
        D    G G  +RI++ VEVH+PL+RG  +     G+ +W+ IKYE+L D+
Subjt:  DELERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.0e-2236.99Show/hide
Query:  WKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDELE
        WK   +++++  G N+F   F  + + + +M+ GPW  D AL++ ++    +  S L F   +FW+H  DLP   LN+  A  +GNAIG F  VD +E  
Subjt:  WKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDELE

Query:  RGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY
           G SLRIR+ +++ +PL+RG  I I+      WI I+YE+LPD+
Subjt:  RGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY

TrEMBL top hitse value%identityAlignment
A0A2I4EYN5 uncharacterized protein LOC1089939011.2e-2034.93Show/hide
Query:  KIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDE
        K+WK   +   K  GDN++   F N+ +K  I+EG PW+ D  L +  +       S+++FK   FW+   +LP +C+N+   E +G  +G  K+VD  E
Subjt:  KIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDE

Query:  LERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLP
           G G  LR+ I+V++ +PL RG  I +  +G+  W   K+EKLP
Subjt:  LERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLP

A0A2N9GWJ4 Reverse transcriptase domain-containing protein1.6e-2032.77Show/hide
Query:  IWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDEL
        +W+     S++  GDN+   +F  + +   ++ G PW  D  L+ F+ + +G     L F    FWV   +LP +C+ ++ AE MG +IG   +    E 
Subjt:  IWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDEL

Query:  ERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPD--YRTTRRTLGTKDDDRKNRPSH-RSEKPPE
        E G G  +RIRI+V++ +PL RG  I + + G E+W++ +YE+LP+  Y     T G KD +   + +    EKPPE
Subjt:  ERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPD--YRTTRRTLGTKDDDRKNRPSH-RSEKPPE

A0A3L6RZW0 Uncharacterized protein1.6e-2032.19Show/hide
Query:  WKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDELE
        W N   ++++  GDN+F  +F +K++K+ I++G PW      +L +E     R + + F + S WV   +LP   +N  W   +   IG+ +KVD D   
Subjt:  WKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDELE

Query:  RGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY
        R  G  LR ++K+++ +PL+RG  +    +   EW  I+YEK+P+Y
Subjt:  RGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY

A0A5C7H9Y2 CCHC-type domain-containing protein2.1e-2033.33Show/hide
Query:  IPKIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDW
        I  IW+   +V+++  G N+F+ +F N  ++  I+EGGPW+ D  LL+  E    E+ + L F+   FW+   +LP  CLNR     +G  +G  K++D 
Subjt:  IPKIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDW

Query:  DELERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY
         E     G  +RIR+ ++V  PLKRG  + +    +   + I YE+LP++
Subjt:  DELERGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY

A0A6J1DU55 uncharacterized protein LOC1110231359.9e-2336.99Show/hide
Query:  WKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDELE
        WK   +++++  G N+F   F  + + + +M+ GPW  D AL++ ++    +  S L F   +FW+H  DLP   LN+  A  +GNAIG F  VD +E  
Subjt:  WKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDELE

Query:  RGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY
           G SLRIR+ +++ +PL+RG  I I+      WI I+YE+LPD+
Subjt:  RGEGNSLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCCGAAGATTTGGAAGAATATGGGCAAAGTTAGCATTAAAAAGGCAGGAGATAACATGTTTGAATGCCAATTCATTAACAAAAGAGAAAAGAGTGGAATAATGGA
AGGTGGTCCTTGGATTTGCGATGGGGCCCTTCTCCTTTTTGAAGAAATCAAAGAAGGGGAGAGGTACTCTAGACTGAGTTTCAAGGAAGCTTCTTTCTGGGTTCATTTTC
TAGACCTCCCAAGGGTGTGCTTGAACCGTAATTGGGCAGAAGCCATGGGTAATGCCATTGGCACTTTCAAAAAGGTAGACTGGGATGAGCTAGAAAGAGGGGAAGGTAAC
TCTTTGAGAATTAGAATTAAAGTAGAGGTGCACAGACCTTTGAAAAGAGGAACCATGATTAAAATAGAATCGCAAGGGGAAGAGGAATGGATCTTCATAAAATATGAAAA
ACTCCCCGATTATAGGACAACTAGAAGAACATTGGGAACTAAAGATGATGACAGGAAAAACCGACCTTCTCACCGGTCGGAAAAGCCACCGGAAAACAAAGAAGAAGATG
GTATGGAAAAAGAGAAGGACATGACAGACACAACGGCTATTTCAGAGAGCACAGGAAAATCTGACACGGAGATGACAGATGGAGAACAAAAGAGTACGAAAAGTAAGGAG
AATGAGAAAGGAAAAGGCAAACTACACGTGATTCTATCACAGTCAACAGTCCACATAAGGCCAAATCTTCTAATGTCAGAAAAGCAAGAGATTAGTGGGGTGGGCCAATC
GACAGGGCCCAAGTTTGAAGAGAAAGATAAAAACTTGGGCCAATTAAAACAAAAAAGGATCTCAAATAATGCCCCAAAGTATCTGGAGGATCTTCATTACAATCAGAACA
GAAGAGCAGGAAAAGAAGCCATTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCCCGAAGATTTGGAAGAATATGGGCAAAGTTAGCATTAAAAAGGCAGGAGATAACATGTTTGAATGCCAATTCATTAACAAAAGAGAAAAGAGTGGAATAATGGA
AGGTGGTCCTTGGATTTGCGATGGGGCCCTTCTCCTTTTTGAAGAAATCAAAGAAGGGGAGAGGTACTCTAGACTGAGTTTCAAGGAAGCTTCTTTCTGGGTTCATTTTC
TAGACCTCCCAAGGGTGTGCTTGAACCGTAATTGGGCAGAAGCCATGGGTAATGCCATTGGCACTTTCAAAAAGGTAGACTGGGATGAGCTAGAAAGAGGGGAAGGTAAC
TCTTTGAGAATTAGAATTAAAGTAGAGGTGCACAGACCTTTGAAAAGAGGAACCATGATTAAAATAGAATCGCAAGGGGAAGAGGAATGGATCTTCATAAAATATGAAAA
ACTCCCCGATTATAGGACAACTAGAAGAACATTGGGAACTAAAGATGATGACAGGAAAAACCGACCTTCTCACCGGTCGGAAAAGCCACCGGAAAACAAAGAAGAAGATG
GTATGGAAAAAGAGAAGGACATGACAGACACAACGGCTATTTCAGAGAGCACAGGAAAATCTGACACGGAGATGACAGATGGAGAACAAAAGAGTACGAAAAGTAAGGAG
AATGAGAAAGGAAAAGGCAAACTACACGTGATTCTATCACAGTCAACAGTCCACATAAGGCCAAATCTTCTAATGTCAGAAAAGCAAGAGATTAGTGGGGTGGGCCAATC
GACAGGGCCCAAGTTTGAAGAGAAAGATAAAAACTTGGGCCAATTAAAACAAAAAAGGATCTCAAATAATGCCCCAAAGTATCTGGAGGATCTTCATTACAATCAGAACA
GAAGAGCAGGAAAAGAAGCCATTGAGTAA
Protein sequenceShow/hide protein sequence
MIPKIWKNMGKVSIKKAGDNMFECQFINKREKSGIMEGGPWICDGALLLFEEIKEGERYSRLSFKEASFWVHFLDLPRVCLNRNWAEAMGNAIGTFKKVDWDELERGEGN
SLRIRIKVEVHRPLKRGTMIKIESQGEEEWIFIKYEKLPDYRTTRRTLGTKDDDRKNRPSHRSEKPPENKEEDGMEKEKDMTDTTAISESTGKSDTEMTDGEQKSTKSKE
NEKGKGKLHVILSQSTVHIRPNLLMSEKQEISGVGQSTGPKFEEKDKNLGQLKQKRISNNAPKYLEDLHYNQNRRAGKEAIE