; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004958 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004958
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein CLT2, chloroplastic-like
Genome locationchr6:8993740..8994255
RNA-Seq ExpressionLag0004958
SyntenyLag0004958
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR013936 - Chloroquine-resistance transporter-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065105.1 protein CLT2 [Cucumis melo var. makuwa]1.5e-5175.16Show/hide
Query:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG
        MTERLSL AE+LSSMG PF SS N IS H PT RSFA P VDA K  SVF MPSP EKW HF +   ++SLRN +I++RN +ARFSS  N NSTPHASNG
Subjt:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG

Query:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVIHALP
        DSDSPA TK+IVVSS+IAVSLAIANRVL+KLALVPLK+YPFFLAQLTTFGQVI+ALP
Subjt:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVIHALP

XP_008444902.1 PREDICTED: protein CLT2, chloroplastic isoform X1 [Cucumis melo]5.7e-4673.2Show/hide
Query:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG
        MTERLSL AE+LSSMG PF SS N IS H PT RSFA P VDA K  SVF MPSP EKW HF +   ++SLRN +I++RN +ARFSS  N NSTP ASNG
Subjt:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG

Query:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI
        DSDSPA TK+IVVSS+IAVSLAIANRVL+KLALVPLK+YPFFLAQLTTFG V+
Subjt:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI

XP_008444903.1 PREDICTED: protein CLT2, chloroplastic isoform X2 [Cucumis melo]5.7e-4673.2Show/hide
Query:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG
        MTERLSL AE+LSSMG PF SS N IS H PT RSFA P VDA K  SVF MPSP EKW HF +   ++SLRN +I++RN +ARFSS  N NSTP ASNG
Subjt:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG

Query:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI
        DSDSPA TK+IVVSS+IAVSLAIANRVL+KLALVPLK+YPFFLAQLTTFG V+
Subjt:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI

XP_022132091.1 protein CLT2, chloroplastic-like [Momordica charantia]2.8e-4574.64Show/hide
Query:  MGFPFTSSLNAISFHLPTSRSFAFPVDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNGDSDSPAITKIIVVSS
        MG PFTSSLN+ISFH  T  SF  PVDAPKF SVFLMPSP+EK  HF++SSIS S RNFRIRSR+ + RFSS +N NS+PHASNGDSD PA  K++VVSS
Subjt:  MGFPFTSSLNAISFHLPTSRSFAFPVDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNGDSDSPAITKIIVVSS

Query:  VIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI
        +I VSLA+ANRVL+KLALVPLK YPFFLAQLTTFG VI
Subjt:  VIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI

XP_038885312.1 protein CLT2, chloroplastic [Benincasa hispida]5.3e-5277.78Show/hide
Query:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG
        MTERLSL AE+LSSMG PF SSLN ISFHLPT RSFAFP VDAPKF SVF MPS +EKW+HF + ++SSSLRN  IR+RN +ARFSS  NPNSTPH SNG
Subjt:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG

Query:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI
        DSDSPA  K IVVSS+IAVSL IANRVL+KLALVPLK+YPFFLAQLTTFG V+
Subjt:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI

TrEMBL top hitse value%identityAlignment
A0A0A0LLB8 Uncharacterized protein2.3e-4570.97Show/hide
Query:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFPV-DAPKFESVFLMPSPEEKWNHFQ--QSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHAS
        MTERLSL AE+LS MG PF SS N IS  LP  RS  FP+ DA KF SVF MPS  EKW+H    + ++SSSLRNFRIR+RN +ARFSS  + +STPHAS
Subjt:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFPV-DAPKFESVFLMPSPEEKWNHFQ--QSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHAS

Query:  NGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI
        NGDS+SPA TK+IVVSS+IAVSLAIANRVL+KLALVPLK+YPFFLAQLTTFG V+
Subjt:  NGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI

A0A1S3BBG1 protein CLT2, chloroplastic isoform X12.8e-4673.2Show/hide
Query:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG
        MTERLSL AE+LSSMG PF SS N IS H PT RSFA P VDA K  SVF MPSP EKW HF +   ++SLRN +I++RN +ARFSS  N NSTP ASNG
Subjt:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG

Query:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI
        DSDSPA TK+IVVSS+IAVSLAIANRVL+KLALVPLK+YPFFLAQLTTFG V+
Subjt:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI

A0A1S3BBG3 protein CLT2, chloroplastic isoform X22.8e-4673.2Show/hide
Query:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG
        MTERLSL AE+LSSMG PF SS N IS H PT RSFA P VDA K  SVF MPSP EKW HF +   ++SLRN +I++RN +ARFSS  N NSTP ASNG
Subjt:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG

Query:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI
        DSDSPA TK+IVVSS+IAVSLAIANRVL+KLALVPLK+YPFFLAQLTTFG V+
Subjt:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI

A0A5A7VGY6 Protein CLT27.5e-5275.16Show/hide
Query:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG
        MTERLSL AE+LSSMG PF SS N IS H PT RSFA P VDA K  SVF MPSP EKW HF +   ++SLRN +I++RN +ARFSS  N NSTPHASNG
Subjt:  MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFP-VDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNG

Query:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVIHALP
        DSDSPA TK+IVVSS+IAVSLAIANRVL+KLALVPLK+YPFFLAQLTTFGQVI+ALP
Subjt:  DSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVIHALP

A0A6J1BR98 protein CLT2, chloroplastic-like1.4e-4574.64Show/hide
Query:  MGFPFTSSLNAISFHLPTSRSFAFPVDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNGDSDSPAITKIIVVSS
        MG PFTSSLN+ISFH  T  SF  PVDAPKF SVFLMPSP+EK  HF++SSIS S RNFRIRSR+ + RFSS +N NS+PHASNGDSD PA  K++VVSS
Subjt:  MGFPFTSSLNAISFHLPTSRSFAFPVDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNGDSDSPAITKIIVVSS

Query:  VIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI
        +I VSLA+ANRVL+KLALVPLK YPFFLAQLTTFG VI
Subjt:  VIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVI

SwissProt top hitse value%identityAlignment
A1L4X0 Protein CLT2, chloroplastic2.8e-1143.52Show/hide
Query:  FQQSSISSSLRNFR---------IRSRNSRARF-------SSLKNPNSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQ
        +Q S  SS L ++R         +R  + R+RF       S ++ P  +  AS  +S  P+   +IV +SV+ V+LA+ANRVL+KLALVP+K YPFF+AQ
Subjt:  FQQSSISSSLRNFR---------IRSRNSRARF-------SSLKNPNSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQ

Query:  LTTFGQVI
        LTTFG V+
Subjt:  LTTFGQVI

Q058P6 Protein CLT1, chloroplastic2.4e-0754.39Show/hide
Query:  HASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQV
        HA  G  D    T  IV+++    +L + NRVL+KLAL+PLK YPFFLAQL+TFG V
Subjt:  HASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQV

Q8RWL5 Protein CLT3, chloroplastic7.1e-0749.18Show/hide
Query:  NSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQV
        +ST H  +G+      T  IV+ + +  +  + NRV++KLALVPLK+YPFFLAQL+TFG V
Subjt:  NSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQV

Arabidopsis top hitse value%identityAlignment
AT4G24460.1 CRT (chloroquine-resistance transporter)-like transporter 22.0e-1243.52Show/hide
Query:  FQQSSISSSLRNFR---------IRSRNSRARF-------SSLKNPNSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQ
        +Q S  SS L ++R         +R  + R+RF       S ++ P  +  AS  +S  P+   +IV +SV+ V+LA+ANRVL+KLALVP+K YPFF+AQ
Subjt:  FQQSSISSSLRNFR---------IRSRNSRARF-------SSLKNPNSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQ

Query:  LTTFGQVI
        LTTFG V+
Subjt:  LTTFGQVI

AT4G24460.2 CRT (chloroquine-resistance transporter)-like transporter 22.0e-1243.52Show/hide
Query:  FQQSSISSSLRNFR---------IRSRNSRARF-------SSLKNPNSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQ
        +Q S  SS L ++R         +R  + R+RF       S ++ P  +  AS  +S  P+   +IV +SV+ V+LA+ANRVL+KLALVP+K YPFF+AQ
Subjt:  FQQSSISSSLRNFR---------IRSRNSRARF-------SSLKNPNSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQ

Query:  LTTFGQVI
        LTTFG V+
Subjt:  LTTFGQVI

AT5G12170.2 CRT (chloroquine-resistance transporter)-like transporter 35.0e-0849.18Show/hide
Query:  NSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQV
        +ST H  +G+      T  IV+ + +  +  + NRV++KLALVPLK+YPFFLAQL+TFG V
Subjt:  NSTPHASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQV

AT5G19380.1 CRT (chloroquine-resistance transporter)-like transporter 11.7e-0854.39Show/hide
Query:  HASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQV
        HA  G  D    T  IV+++    +L + NRVL+KLAL+PLK YPFFLAQL+TFG V
Subjt:  HASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQV

AT5G19380.2 CRT (chloroquine-resistance transporter)-like transporter 15.0e-0854.55Show/hide
Query:  HASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFG
        HA  G  D    T  IV+++    +L + NRVL+KLAL+PLK YPFFLAQL+TFG
Subjt:  HASNGDSDSPAITKIIVVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGAGCGACTTTCGCTGTGTGCCGAAAAACTCTCGTCCATGGGATTCCCGTTTACGTCGTCGCTGAATGCAATTTCTTTCCACCTCCCGACGTCTCGTTCGTTCGC
TTTCCCCGTCGATGCACCGAAATTCGAATCTGTTTTCTTAATGCCTTCGCCAGAGGAGAAATGGAATCATTTCCAGCAATCATCGATATCATCTTCACTAAGAAATTTCA
GAATCAGGAGCAGAAATAGTAGAGCTCGATTCAGCTCCCTGAAGAATCCGAATTCCACACCTCATGCCTCCAATGGCGATTCAGATTCTCCTGCTATAACGAAGATTATA
GTAGTAAGCTCTGTAATTGCCGTCTCACTAGCAATTGCGAACCGTGTGCTGCACAAGCTTGCTCTCGTCCCATTGAAGGACTATCCATTCTTCTTAGCTCAATTGACTAC
CTTTGGGCAAGTTATTCATGCTCTGCCTTGCTATTTTTTAACTTTTGGAATGTTGTGTTGCATTTACTGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGAGCGACTTTCGCTGTGTGCCGAAAAACTCTCGTCCATGGGATTCCCGTTTACGTCGTCGCTGAATGCAATTTCTTTCCACCTCCCGACGTCTCGTTCGTTCGC
TTTCCCCGTCGATGCACCGAAATTCGAATCTGTTTTCTTAATGCCTTCGCCAGAGGAGAAATGGAATCATTTCCAGCAATCATCGATATCATCTTCACTAAGAAATTTCA
GAATCAGGAGCAGAAATAGTAGAGCTCGATTCAGCTCCCTGAAGAATCCGAATTCCACACCTCATGCCTCCAATGGCGATTCAGATTCTCCTGCTATAACGAAGATTATA
GTAGTAAGCTCTGTAATTGCCGTCTCACTAGCAATTGCGAACCGTGTGCTGCACAAGCTTGCTCTCGTCCCATTGAAGGACTATCCATTCTTCTTAGCTCAATTGACTAC
CTTTGGGCAAGTTATTCATGCTCTGCCTTGCTATTTTTTAACTTTTGGAATGTTGTGTTGCATTTACTGCTTTTAA
Protein sequenceShow/hide protein sequence
MTERLSLCAEKLSSMGFPFTSSLNAISFHLPTSRSFAFPVDAPKFESVFLMPSPEEKWNHFQQSSISSSLRNFRIRSRNSRARFSSLKNPNSTPHASNGDSDSPAITKII
VVSSVIAVSLAIANRVLHKLALVPLKDYPFFLAQLTTFGQVIHALPCYFLTFGMLCCIYCF