CuGenDBv2

Gene ID	Lag0004964
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	chr6:9089688..9093096
RNA-Seq Expression	Lag0004964
Synteny	Lag0004964
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.3e-28

81.18

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+ EDGT ++KSVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]

3.5e-29

83.53

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL
        +DSINN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFEPKFLYNVSSASQEE+ +KMA EKLCSLEDGT D+KSVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

2.7e-29

82.35

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++KSVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.1e-27

72.63

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKS---VQNLFDVQSIH
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K    + + FD++ IH
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKS---VQNLFDVQSIH

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

3.9e-28

81.18

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFE KFLYNVSSASQEE+ VKMAREKLC+LEDGT ++KSVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

6.5e-29

81.18

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+ EDGT ++KSVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein

1.7e-29

83.53

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL
        +DSINN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFEPKFLYNVSSASQEE+ +KMA EKLCSLEDGT D+KSVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL

A0A5D3BWE8 F15O4.13

1.3e-29

82.35

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++KSVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein

5.5e-28

72.63

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKS---VQNLFDVQSIH
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K    + + FD++ IH
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKS---VQNLFDVQSIH

A0A5D3DRJ1 F15O4.13

1.9e-28

81.18

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLH QKL NAQRE  NFE KFLYNVSSASQEE+ VKMAREKLC+LEDGT ++KSVQNL
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTCAATCAATAATCCATTACATGTACCTGAAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACACTGCATGCTCAAAAGCTAACAAATGC
ACAACGAGAGGCCGTGAATTTTGAACCCAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAG
ATGGCACGGAGGACAAAAAAAGTGTGCAGAATTTGTTTGATGTTCAATCGATTCATTGGATTAGTTTTGATCAATCTAATTCTGGAGTAATTTTGGACCACCACAGTGTA
CGAGGAGCTGACGAGGACAACCAGGAGGAGATGGGACCAGGAAAAGGACCCAGAGGAAGACTAGACCAACAGGCCGAGCCAACGTGGCCCGACCCGTACGGTCGGCCCGC
TTGTGCGGGCCAAGTCGGTTCGCCTCCACTCGGTCCCTATCGCCTCGAGTCGTCCCGGTTCCCTGCTCAGTTTTCTGACTTAGGCATCGGAGGTGGTGTGGCCTACACCA
CACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCCGAGCTTCTACAAATTCACTGTTGGTGTCACGTGAAGGCCAGGTGA

mRNA sequence

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Protein sequence

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MDSINNPLHVPEGPITRSKAKKIQEAFTLHAQKLTNAQREAVNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSVQNLFDVQSIHWISFDQSNSGVILDHHSV
RGADEDNQEEMGPGKGPRGRLDQQAEPTWPDPYGRPACAGQVGSPPLGPYRLESSRFPAQFSDLGIGGGVAYTTPVSSDSCWSCRSRLPELLQIHCWCHVKAR

Lag0004964 (gene) of Sponge gourd (AG-4) v1 genome