CuGenDBv2

Gene ID	Lag0004969
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribosomal RNA small subunit methyltransferase A
Genome location	chr6:9121591..9122139
RNA-Seq Expression	Lag0004969
Synteny	Lag0004969
Gene Ontology terms	GO:0032259 - methylation (biological process) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0065096.1 Ribosomal RNA small subunit methyltransferase A [Cucumis melo var. makuwa]

5.1e-85

95.15

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Query:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPR+SN GSALNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFFSSLH
        GWSEPHGPGFQSDD++DNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGK CFFSSLH
Subjt:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFFSSLH

KAG6585342.1 hypothetical protein SDJN03_18075, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-79

94.16

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        WSEPHGPGF SDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

KAG7020253.1 hypothetical protein SDJN02_16936, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-83

94.38

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFF
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSAGK CFF
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFF

XP_022951746.1 uncharacterized protein LOC111454487 [Cucurbita moschata]

2.9e-80

94.81

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

XP_023001877.1 uncharacterized protein LOC111495931 [Cucurbita maxima]

1.7e-80

94.81

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VFJ3 Ribosomal RNA small subunit methyltransferase A

2.5e-85

95.15

Show/hide

Query:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPR+SN GSALNASLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSREERK+DREYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSN-GSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFFSSLH
        GWSEPHGPGFQSDD++DNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGK CFFSSLH
Subjt:  GWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFFSSLH

A0A6J1BRV5 uncharacterized protein LOC111005141 isoform X1

1.2e-79

94.81

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KEPR+SNGS LNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        WSEP+GPGFQSDDD DNSFAVLVPCYG +YNDFVDETKNSILSAVGNINDSFSA
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

A0A6J1BVP6 uncharacterized protein LOC111005141 isoform X2

1.2e-79

94.81

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KEPR+SNGS LNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        WSEP+GPGFQSDDD DNSFAVLVPCYG +YNDFVDETKNSILSAVGNINDSFSA
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

A0A6J1GID2 uncharacterized protein LOC111454487

1.4e-80

94.81

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

A0A6J1KME1 uncharacterized protein LOC111495931

8.2e-81

94.81

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPRTSNGSA NASLDT IREPDTLKFPL NGANISSSSRRV+RKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA
        WSEPHGPGFQSDD+TDNSFAVLVPCYGR+YNDFVDETKNSILSA GNINDSFSA
Subjt:  WSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38060.1 unknown protein

1.1e-10

Show/hide

Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG
        SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +      N +LSAV N+ +    G
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAG

AT4G38060.2 unknown protein

2.0e-10

51.47

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Query:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNI
        SGSES      D  +WS+GW+EPHGP FQSDD+  D  F VLVPCY R   +      N +LSAV N+
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQSDDD-TDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNI

AT5G65480.1 unknown protein

5.9e-15

34.48

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Query:  MSVAFPQLSWWLWSGKHKEPRTSNGSAL--NASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS
        M+V+FP+L  WL  G + + R    S    ++SL  ++++  T K       + SSS ++ KR W  R       E D +      G V   E DD +WS
Subjt:  MSVAFPQLSWWLWSGKHKEPRTSNGSAL--NASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWS

Query:  IGWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILS
        IGW EPHGPGF+++DD    F VLVP Y ++ +   ++  N   S
Subjt:  IGWSEPHGPGFQSDDDTDNSFAVLVPCYGRIYNDFVDETKNSILS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGTGGAGTGGGAAGCATAAAGAACCTCGAACATCTAATGGATCTGCTCTAAATGCTTCACTAGATACAGCCATTCG
GGAACCGGATACTCTGAAATTTCCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAGCGGAAATGGCATAGTCGTGAAGAGAGGAAAATTGATAGGG
AATATGACATTGTTCTTGTTCCATCTGATGGAGGATGCGTTTCTGGGTCTGAATCTGATGATTCAGATTGGTCGATTGGATGGTCGGAACCCCATGGACCTGGATTCCAG
AGCGATGATGACACAGACAACAGTTTTGCTGTGCTGGTTCCTTGTTATGGACGCATTTATAATGATTTTGTGGACGAAACTAAGAACAGTATCCTTAGTGCTGTTGGAAA
CATCAACGATAGCTTTTCTGCCGGTAAGATTTGTTTCTTCTCAAGCTTGCATTTTGATTGGTGTTGCTTGTTTGTTTTTATTGCTTCGCCTTCCGAAATATTCTTCTAG

mRNA sequence

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Protein sequence

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MSVAFPQLSWWLWSGKHKEPRTSNGSALNASLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQ
SDDDTDNSFAVLVPCYGRIYNDFVDETKNSILSAVGNINDSFSAGKICFFSSLHFDWCCLFVFIASPSEIFF

Lag0004969 (gene) of Sponge gourd (AG-4) v1 genome